Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0699
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...   240   1e-64
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    40   3e-04
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    31   0.17 
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     31   0.17 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   1.6  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    27   3.6  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    26   4.7  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    26   4.7  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    25   8.3  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   8.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.3  

>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
            Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score =  240 bits (588), Expect = 1e-64
 Identities = 116/211 (54%), Positives = 150/211 (71%)
 Frame = +2

Query: 89   SSVQAVATLGVAVIALAEETGAEMCTRIFGQLGRYGEPAVRRAVPLAIALCSVSNPQLSV 268
            +++Q  A LGVA IA+ E+ GAEM  R F  +  YGEP++R+A+PLA+ L S SNPQ+ +
Sbjct: 628  TTIQTFAALGVATIAMGEDIGAEMVLRHFDHMMHYGEPSIRKAIPLALGLLSASNPQMRI 687

Query: 269  IDVLNKYSHDSDNDVAYNAIFAMGLVGAGTNNXXXXXXXXXXXXYHGKSPVHLFMVRLAQ 448
             D L++YSHD+D DVAYNAIFAMGLVGAGT+N            Y+ K    LFMVR+AQ
Sbjct: 688  FDTLSRYSHDNDLDVAYNAIFAMGLVGAGTSNARLAQLLRQLASYYHKESNALFMVRIAQ 747

Query: 449  GLCYAGKGTVTLCPAHADRRLLNQPALAGLLVVLTAFLDCKTIILGKSHYLLYVLATAMQ 628
            GL Y GKGT+TL P H +R++L Q A AGL+ V+ A LD  T +L  SH+LLY +  A++
Sbjct: 748  GLLYLGKGTMTLNPYHTERQILGQTAFAGLMTVVLAMLDANTFVLDTSHWLLYAITLAIR 807

Query: 629  PRWLVTLDENLQPLNVSVRVGQAVDVIGKAG 721
            PR L+TL E+ Q L VSVRVGQAVDV+G+AG
Sbjct: 808  PRMLITLGEDGQYLPVSVRVGQAVDVVGQAG 838


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 3/180 (1%)
 Frame = -3

Query: 570 LQSRKAVSTTSR-PASAGWLSRRRSACAGHRVTVPLPA*HSPCASRTMNRCTGDLPWYSA 394
           L S    STTS  P S+   S   S  A +  T       S  AS ++N  T      + 
Sbjct: 159 LASSSTNSTTSATPTSSATSSSLSSTAASNSAT------SSSLASSSLNSTTS-----AT 207

Query: 393 SARSIVASLALLVPAPTSPMANMAL*ATSLSESWEYLLSTSMTESCGLDTEHRAMASGTA 214
           +  S ++S A    A +S +A+ +L +T+ + +    +S++++ S  L + +   A+ +A
Sbjct: 208 ATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSA 267

Query: 213 RRTAGSPYLPSCPKM--RVHISAPVSSANAMTATPRVATACTEDSSLLASFSYPFPVFAV 40
             T+ S    +   +      S P+SSAN+ TAT   +T  T  +S   + +   P+ +V
Sbjct: 268 SATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSV 327



 Score = 33.9 bits (74), Expect = 0.024
 Identities = 43/172 (25%), Positives = 70/172 (40%)
 Frame = -3

Query: 555 AVSTTSRPASAGWLSRRRSACAGHRVTVPLPA*HSPCASRTMNRCTGDLPWYSASARSIV 376
           A STT+  AS+  L+   S       + PL +  S  A+ T    T   P  S ++ +  
Sbjct: 295 ANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSS--ANSTTATSTSSTPLSSVNSTTAT 352

Query: 375 ASLALLVPAPTSPMANMAL*ATSLSESWEYLLSTSMTESCGLDTEHRAMASGTARRTAGS 196
           ++ +  + +  S  A  A      S +     S S T     ++      S TA     S
Sbjct: 353 SASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTS 412

Query: 195 PYLPSCPKMRVHISAPVSSANAMTATPRVATACTEDSSLLASFSYPFPVFAV 40
             LP+        S P+SSAN+ TAT   +T  +  +S  A+ +   P+ +V
Sbjct: 413 SVLPTSSVS----STPLSSANSTTATSASSTPLSSVNSTTATSASSTPLSSV 460



 Score = 31.5 bits (68), Expect = 0.13
 Identities = 44/172 (25%), Positives = 74/172 (43%)
 Frame = -3

Query: 555 AVSTTSRPASAGWLSRRRSACAGHRVTVPLPA*HSPCASRTMNRCTGDLPWYSASARSIV 376
           A STT+   S+  LS   S  A    + PL + +S  A+   +     +   S SA S  
Sbjct: 330 ANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVN--STSATS-- 385

Query: 375 ASLALLVPAPTSPMANMAL*ATSLSESWEYLLSTSMTESCGLDTEHRAMASGTARRTAGS 196
           AS   L  A ++   +++  +T+ S +   +L TS   S  L + +   A+  +     S
Sbjct: 386 ASSTPLTSANSTTSTSVS--STAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLSS 443

Query: 195 PYLPSCPKMRVHISAPVSSANAMTATPRVATACTEDSSLLASFSYPFPVFAV 40
               +        S P+SS N+ TAT   +T  T  +S  A+ +   P+ +V
Sbjct: 444 VNSTTATSAS---STPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSV 492



 Score = 27.9 bits (59), Expect = 1.6
 Identities = 51/197 (25%), Positives = 80/197 (40%), Gaps = 20/197 (10%)
 Frame = -3

Query: 570 LQSRKAVSTTSRPASAGWLSRRRSACAGHRVTVPLPA*HSPCASRTMNRCTGDLPWYSAS 391
           L S    STTS  A++  LS   S  A +  T       S  AS ++N  T      +A+
Sbjct: 195 LASSSLNSTTSATATSSSLS---STAASNSAT------SSSLASSSLNSTTSA----TAT 241

Query: 390 ARSIVASLALLVPAPTSPMANMAL*ATSLSESWEYLLSTSMTESCGLDTEHRAMASGTAR 211
           + SI ++++   P  +S     A  A++ S S +Y  S+ +  S    T   +  S TA 
Sbjct: 242 SSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTAT 301

Query: 210 RTAGSPYLP----------SCPKMRVHI----------SAPVSSANAMTATPRVATACTE 91
             + +P             S P   V            S P+SS N+ TAT   +T  T 
Sbjct: 302 SASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTS 361

Query: 90  DSSLLASFSYPFPVFAV 40
            +S  A+ +   P+ +V
Sbjct: 362 VNSTTATSASSTPLTSV 378



 Score = 27.1 bits (57), Expect = 2.7
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = -3

Query: 279 STSMTESCGLD-TEHRAMASGTARRTAGSPYLPSCPKMRVHISAPVSSANAMTATPRVAT 103
           STS T +     T   +  S +   TA S    S        S P+SSAN+ TAT   +T
Sbjct: 494 STSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASST 553

Query: 102 ACTEDSSLLASFSYPFP 52
             T  +S  A+ +   P
Sbjct: 554 PLTSVNSTTATSASSTP 570


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 27/110 (24%), Positives = 55/110 (50%)
 Frame = -3

Query: 393 SARSIVASLALLVPAPTSPMANMAL*ATSLSESWEYLLSTSMTESCGLDTEHRAMASGTA 214
           S  S   S + +V + +SP ++ +   TS S S   + STS + S    +   + +S TA
Sbjct: 204 STSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTA 263

Query: 213 RRTAGSPYLPSCPKMRVHISAPVSSANAMTATPRVATACTEDSSLLASFS 64
             ++ S  + S        S+P S+++ ++++   +++ T  SS ++S S
Sbjct: 264 SSSSSSSSIISSSSS--SSSSPTSTSSTISSSSSSSSSPTSTSSTISSSS 311


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 593 HYLLYVLATAMQPRWLVTLDENLQPLN 673
           H++LYV +  +QP WL   D N+ P N
Sbjct: 333 HFVLYVPSPQIQPLWLENEDSNIIPTN 359


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 45/217 (20%), Positives = 96/217 (44%), Gaps = 4/217 (1%)
 Frame = -3

Query: 717  AFPITSTACPTRTLTFKG*RFSSRVTSQRGCIAVANTYSK*WDLPRIMVLQSRKAVSTTS 538
            A P TS++ P+ ++       SS +TS     +   T S       I  + S   +S++S
Sbjct: 517  AIPSTSSSTPSSSI------ISSPMTSVLSSSSSIPTSSSSDFSSSITTISS--GISSSS 568

Query: 537  RPASAGWLSRRRSACAGHRVTVPLPA*HSPCASRTMNRCTGDLPWYSASARSIVASLALL 358
             P++   +S   S+      +  L    S   S T +  +   P   +S  S ++S + +
Sbjct: 569  IPSTFSSVSSILSSSTSSPSSTSLSI-SSSSTSSTFSSASTSSP---SSISSSISSSSTI 624

Query: 357  VPAPTSPMANMAL*ATSLSESWEYLLSTSMTE---SCGLDT-EHRAMASGTARRTAGSPY 190
            + +PT   +++ + ++S+      +LS+S++    S  L T     + S +   ++ S  
Sbjct: 625  LSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLVSSSSSL 684

Query: 189  LPSCPKMRVHISAPVSSANAMTATPRVATACTEDSSL 79
            + S   +    S+P+ S++++ +T   + +    SSL
Sbjct: 685  IVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSSL 721


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
 Frame = +2

Query: 236 LCSVSNPQ------LSVIDVLNKYSHDSDNDVAYNAIFAMGLVGAGTN 361
           +C   NPQ        VI VL+K  +  D DV  +A++A+  +  G N
Sbjct: 233 MCRGKNPQPDWNSISQVIPVLSKLIYTLDEDVLVDALWAISYLSDGAN 280


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -2

Query: 712 SDNIHSLSHTHADVQGLKIFVEGDQPAGLHRSRQYVQQVVGFAEDYGLAVEE 557
           +DN+  L     +V+ + + + G  PAGL  + +  QQ      D  + V E
Sbjct: 75  TDNLRKLDTIEREVEDVDVCIVGAGPAGLSAAIRIKQQAAKANRDIRVVVLE 126


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 261 SCGLDTEHRAMASGTARRTAGSPYLPS 181
           S   +T ++A+ S ++ R+ G PY PS
Sbjct: 93  SPSFNTSYQAIPSSSSNRSRGGPYTPS 119


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +3

Query: 87  CPRCKPWRPLASRSSHWPRKRAPKCAPASSDNWVGTG 197
           CP CK +RP   R   W   R PK      + + G G
Sbjct: 713 CPGCKAFRPATKRLEIW---RLPKILVIHLNRFSGHG 746


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 241 AQGDGERHGAPHCRLPVPTQLSEDA 167
           A GDGE    P C +P+   LS  A
Sbjct: 741 AAGDGENVNCPSCFIPLSIDLSAPA 765


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 147 VSSANAMTATPRVATACTEDSSLL 76
           +SS+  +T+TP   T CT  +S+L
Sbjct: 516 ISSSTPVTSTPVTTTNCTTSTSVL 539



 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 147 VSSANAMTATPRVATACTEDSSLL 76
           +SS+  +T+TP   T CT  +S+L
Sbjct: 575 ISSSTPVTSTPVTTTNCTTSTSVL 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,268
Number of Sequences: 5004
Number of extensions: 42055
Number of successful extensions: 138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)