Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0699
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 231 3e-61
09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,956... 230 7e-61
06_03_1276 - 28907726-28907842,28908012-28908062,28908146-289082... 208 3e-54
02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207... 34 0.099
06_01_0672 - 4903126-4903219,4903322-4903430,4903620-4905096,490... 31 0.70
11_01_0224 + 1752626-1752911,1754881-1754963,1755307-1755402 31 1.2
08_02_1623 - 28314402-28315094 30 1.6
07_03_0337 + 16918613-16919078,16921610-16921725,16922039-169222... 30 2.1
06_02_0289 + 13825103-13825510,13825651-13826112,13826189-138270... 29 2.8
03_05_0662 + 26540625-26541152 29 3.7
02_05_0256 + 27201483-27202499,27203297-27203375,27204617-272049... 29 3.7
01_07_0178 + 41810795-41811409 29 3.7
01_06_1560 + 38251268-38251471,38251567-38251672,38251992-382522... 29 4.9
02_01_0492 - 3564344-3565036 28 6.5
07_03_0844 - 21971222-21971635 28 8.6
06_03_0981 + 26527005-26527260,26527457-26527770 28 8.6
04_04_0909 - 29312875-29313135,29313235-29313556,29313676-293139... 28 8.6
>02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 231 bits (566), Expect = 3e-61
Identities = 112/208 (53%), Positives = 150/208 (72%)
Frame = +2
Query: 98 QAVATLGVAVIALAEETGAEMCTRIFGQLGRYGEPAVRRAVPLAIALCSVSNPQLSVIDV 277
Q A LG+A+IA+AEE GAEM R +L +YGE +RRAVPLA+ + +SNP+++V+D
Sbjct: 639 QGPAVLGIALIAMAEELGAEMAVRSLERLLQYGEQNIRRAVPLALGILCISNPKVNVMDT 698
Query: 278 LNKYSHDSDNDVAYNAIFAMGLVGAGTNNXXXXXXXXXXXXYHGKSPVHLFMVRLAQGLC 457
L++ SHD+D DV+ AI ++G +GAGTNN Y+ K HLF VR+AQGL
Sbjct: 699 LSRLSHDADADVSMAAIISLGFIGAGTNNARIAGMLRNLSSYYYKEAAHLFCVRIAQGLV 758
Query: 458 YAGKGTVTLCPAHADRRLLNQPALAGLLVVLTAFLDCKTIILGKSHYLLYVLATAMQPRW 637
+ GKG +TL P H+DR LL+ AL GL+ VL A LD K+ ILGK HY+LY++ AMQPR
Sbjct: 759 HLGKGLLTLSPYHSDRFLLSPMALGGLVTVLHACLDMKSTILGKYHYILYIIVLAMQPRM 818
Query: 638 LVTLDENLQPLNVSVRVGQAVDVIGKAG 721
L+T+DE+L+PL+V VRVGQAVDV+G+AG
Sbjct: 819 LLTVDEDLKPLSVPVRVGQAVDVVGQAG 846
>09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,
9568733-9568792,9569022-9569089,9569469-9569535,
9569586-9569666,9570152-9570217,9570372-9570410,
9570527-9570609,9570712-9570823,9570902-9570982,
9571132-9571290,9571397-9571504,9571570-9571674,
9571765-9571905,9572007-9572147,9572205-9572426,
9573617-9573730,9573830-9574045,9574373-9574432,
9574513-9574626,9574735-9574820,9574904-9575012,
9575099-9575277,9575357-9575429
Length = 938
Score = 230 bits (563), Expect = 7e-61
Identities = 113/208 (54%), Positives = 153/208 (73%)
Frame = +2
Query: 98 QAVATLGVAVIALAEETGAEMCTRIFGQLGRYGEPAVRRAVPLAIALCSVSNPQLSVIDV 277
Q A LG+++I++AEE GAEM R +L +YGE +RRAVPLA+ L +SNP+++V+D
Sbjct: 679 QGPAVLGISLISMAEELGAEMAVRSLERLLQYGEQNIRRAVPLALGLLCISNPKVNVMDT 738
Query: 278 LNKYSHDSDNDVAYNAIFAMGLVGAGTNNXXXXXXXXXXXXYHGKSPVHLFMVRLAQGLC 457
+++ SHD+D +V+ AI ++GL+GAGTNN Y+ K HLF VR+AQGL
Sbjct: 739 MSRLSHDADAEVSMAAIISLGLIGAGTNNARIAGMLRNLSSYYYKEAGHLFCVRIAQGLV 798
Query: 458 YAGKGTVTLCPAHADRRLLNQPALAGLLVVLTAFLDCKTIILGKSHYLLYVLATAMQPRW 637
+ GKG +TL P H+DR LL+ ALAGL+ VL A LD K+IILGK HY+LY+LA AMQPR
Sbjct: 799 HLGKGLLTLSPYHSDRFLLSPIALAGLVTVLHACLDMKSIILGKYHYMLYILALAMQPRM 858
Query: 638 LVTLDENLQPLNVSVRVGQAVDVIGKAG 721
L+T+DE+L+PL+V V VGQAVDV+G+AG
Sbjct: 859 LLTVDEDLKPLSVPVCVGQAVDVVGQAG 886
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/63 (23%), Positives = 24/63 (38%)
Frame = +2
Query: 278 LNKYSHDSDNDVAYNAIFAMGLVGAGTNNXXXXXXXXXXXXYHGKSPVHLFMVRLAQGLC 457
L+KY H +D V A+ +G+V G + + + L G+
Sbjct: 469 LDKYLHSNDIHVVAGALLGIGIVSCGVKSDCDPAFALISEYFSRDESIIRIGAILGLGIA 528
Query: 458 YAG 466
YAG
Sbjct: 529 YAG 531
>06_03_1276 - 28907726-28907842,28908012-28908062,28908146-28908254,
28908345-28908430,28908537-28908650,28908731-28908790,
28909088-28909303,28909401-28909514,28910632-28910853,
28910946-28911050,28911136-28911276,28911368-28911472,
28911538-28911645,28911753-28911911,28912060-28912140,
28912219-28912330,28912433-28912515,28912631-28912669,
28913061-28913126,28913601-28913643,28913969-28914036,
28914264-28914323,28914409-28914529,28915167-28915267,
28915354-28915494
Length = 873
Score = 208 bits (509), Expect = 3e-54
Identities = 102/193 (52%), Positives = 139/193 (72%)
Frame = +2
Query: 98 QAVATLGVAVIALAEETGAEMCTRIFGQLGRYGEPAVRRAVPLAIALCSVSNPQLSVIDV 277
Q A LG+++IA+AEE GAEM R +L +YGE +RRAVPLA+ L +SNP+++V+D
Sbjct: 642 QGPAVLGISLIAMAEELGAEMAVRSLERLLQYGEQNIRRAVPLALGLLCISNPKVNVMDT 701
Query: 278 LNKYSHDSDNDVAYNAIFAMGLVGAGTNNXXXXXXXXXXXXYHGKSPVHLFMVRLAQGLC 457
+++ SHD+D +V+ AI ++GL+GAGTNN Y+ K HLF VR+AQGL
Sbjct: 702 MSRLSHDADAEVSMAAIISLGLIGAGTNNARIAGMLRNLSSYYYKEAGHLFCVRIAQGLV 761
Query: 458 YAGKGTVTLCPAHADRRLLNQPALAGLLVVLTAFLDCKTIILGKSHYLLYVLATAMQPRW 637
+ GKG +TL P H+DR LL+ ALAGL+ VL A LD K+IILGK HY+LY+L AMQPR
Sbjct: 762 HLGKGLLTLSPYHSDRFLLSPIALAGLVTVLHACLDMKSIILGKYHYMLYILTLAMQPRM 821
Query: 638 LVTLDENLQPLNV 676
L+T+DE+L+PL+V
Sbjct: 822 LLTVDEDLKPLSV 834
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/63 (23%), Positives = 24/63 (38%)
Frame = +2
Query: 278 LNKYSHDSDNDVAYNAIFAMGLVGAGTNNXXXXXXXXXXXXYHGKSPVHLFMVRLAQGLC 457
L+KY H +D V A+ +G+V G + + + L G+
Sbjct: 444 LDKYLHSNDIHVVAGALLGIGIVSCGVKSDCDPAFALISEYFSRDESIIRIGAILGLGIA 503
Query: 458 YAG 466
YAG
Sbjct: 504 YAG 506
>02_01_0311 -
2075881-2076165,2076450-2076519,2076628-2076691,
2076798-2076837,2076930-2077006,2077095-2077311,
2077482-2078132
Length = 467
Score = 34.3 bits (75), Expect = 0.099
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = -3
Query: 375 ASLALLVPAPTSPMANMAL*ATSLSESWEYLLSTSMTESCGLDTEHRAMASGTARRTAGS 196
+SL ++P T +L S +E + +LS+S T L T M SG+ R+T
Sbjct: 67 SSLPKILPFSTDSNGESSLSRMSQAEFSDPILSSSSTFCTSLYTSS-PMNSGSCRKTGYL 125
Query: 195 PYLPSCPKM-RVHISAPVSSANAM 127
P+LP PK + SA SS++ M
Sbjct: 126 PFLPQPPKCEQQQNSAGQSSSSLM 149
>06_01_0672 -
4903126-4903219,4903322-4903430,4903620-4905096,
4906200-4906538
Length = 672
Score = 31.5 bits (68), Expect = 0.70
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Frame = -3
Query: 351 APTSPMANMAL*ATSLSESWEYLLSTSMTESCGLDTEHRAMASGTARRTAG-SPYLPSCP 175
+P +P ++ A AT LS +T+ + + + + ++ ARR A P PS P
Sbjct: 126 SPATPRSSSATKAT-LSRPRTTPRTTTPSPAGAAASPRLSSSNPDARRRAPPQPEPPSTP 184
Query: 174 KMRVHI-SAPVSSANAMTATPRVATACTEDSSLLASFS 64
+ + SA +S A TATPR+ SSL S S
Sbjct: 185 RKENRVPSAAAASTAAATATPRLRALSRSRSSLKESAS 222
>11_01_0224 + 1752626-1752911,1754881-1754963,1755307-1755402
Length = 154
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -3
Query: 249 DTEHRAMASGTARRTAGSPYLPSCPKMRVHISAPVSSANAMTA 121
D E +A A A A P LPS P+ R+ + A V+S + +TA
Sbjct: 34 DEEEKAPAGSGAAIAAARPLLPSSPRSRIEM-AMVNSPSGVTA 75
>08_02_1623 - 28314402-28315094
Length = 230
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -3
Query: 252 LDTEHRAMASGTARRTAGSPYLPSCPKMRVHISAPVSSANAMTATPRVATAC-TEDSS 82
L T + A+ + A +A C ++ + ++A + A ATP VAT C T D S
Sbjct: 81 LGTFNTALDAARAYDSAARALYGDCARLNLLLAAATAGAPPAAATPSVATPCSTNDDS 138
>07_03_0337 +
16918613-16919078,16921610-16921725,16922039-16922208,
16922509-16922602,16923371-16923457,16923529-16923609,
16923800-16923925,16924541-16924649,16924723-16924802,
16925401-16925529,16925605-16925705,16926075-16926208,
16926307-16926404,16926488-16926607,16927008-16927022,
16927930-16927957,16928066-16928118,16928446-16928517,
16928605-16928652,16928928-16929033,16929110-16929168,
16929792-16929887,16929942-16929959
Length = 801
Score = 29.9 bits (64), Expect = 2.1
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Frame = -2
Query: 646 GDQPAGLHRSRQYVQQVV---GFAEDY---GLAVEEGGE-HDEQAGERGLVEQAPVRVRG 488
GD+ AG RSR+ +++VV GF DY +A EGG E +GL EQ +
Sbjct: 58 GDRAAGGERSREELERVVMELGFQNDYLKSQIAAAEGGSGAAESELVKGLKEQVERLRKE 117
Query: 487 TQGHRALAGVTQ 452
+ H+ T+
Sbjct: 118 VEEHKQTQKATE 129
>06_02_0289 +
13825103-13825510,13825651-13826112,13826189-13827021,
13827104-13827274,13828025-13828076
Length = 641
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -3
Query: 555 AVSTTSRPASAGWLSRRRSACAGHRVTVP 469
AV TSR LS+RRS+CA VT P
Sbjct: 248 AVHPTSRAQHDASLSQRRSSCASTEVTTP 276
>03_05_0662 + 26540625-26541152
Length = 175
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +3
Query: 603 CTYWRLRCNPAGWSPSTKIFSP*TSACVWD 692
C YW L+ P WS S + +P WD
Sbjct: 17 CKYWLLKTEPGEWSWSDQARAPGGGVAPWD 46
>02_05_0256 +
27201483-27202499,27203297-27203375,27204617-27204946,
27205029-27205198
Length = 531
Score = 29.1 bits (62), Expect = 3.7
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Frame = -3
Query: 444 ASRTMNRCTGDLPWYSASARSIVASLALLVPAPTSPMANMAL*ATSLSESWEYLLSTSMT 265
A+R + R DLP ++SAR++ A P P A+ A +++++ + S S
Sbjct: 148 AARALRRSGRDLPRIASSARAVAAKPP--PPPPAGLPADGTALAAAIADATAAVASASAA 205
Query: 264 ESCGLDTEHRAMASGTAR-RTAGSP-YLPSCPKMRVHISAP 148
G+ + ++A+ TAR A +P ++PS + + P
Sbjct: 206 VFSGVSS--LSIAAATARVEVAATPCWMPSPARFTTPSATP 244
>01_07_0178 + 41810795-41811409
Length = 204
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 376 DDAACAGAVPRQVSGAPVHXXXXXXXVLRRQGHGDP 483
DDA A + PR V A + VLRR GHG+P
Sbjct: 65 DDALMARSTPRSVLPAEISRRELEA-VLRRLGHGEP 99
>01_06_1560 +
38251268-38251471,38251567-38251672,38251992-38252203,
38252306-38252512,38253327-38254694
Length = 698
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +1
Query: 577 NPRQIPLLAVR---IGDCDATPLAGHPRRKSSALERQ 678
+PRQ+ L++R IG+C +P+A P + +E +
Sbjct: 575 SPRQLEKLSIRSSPIGECSLSPVADKPEKSEVVIESE 611
>02_01_0492 - 3564344-3565036
Length = 230
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = -2
Query: 268 DGELRVGHGAQGDGERHGAPHCRLPVPTQLS--EDAGAHFGARFLGQCDDRDAKGRHGLH 95
DGE R+ HG GD + + +L + G +GA G+ D K +GL+
Sbjct: 85 DGEKRLIHGGDGDDDDLSKKKKKKSSGLKLDGYDRHGRRYGAMRFGRVGSVDGKNGNGLY 144
Query: 94 R 92
R
Sbjct: 145 R 145
>07_03_0844 - 21971222-21971635
Length = 137
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 601 AVRIGDCDATPLAGHPRRKSSALERQRACGTGCGC 705
AVRI + D + + H ++ E +RAC C C
Sbjct: 57 AVRISNGDISEVFDHRMHDTNVQELERACKVACWC 91
>06_03_0981 + 26527005-26527260,26527457-26527770
Length = 189
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 558 KAVSTTSRPASAGWLSRRRSACAGHRVTVPLPA 460
+ V+T + A A W SRRR +C+G V + A
Sbjct: 28 RRVTTVAIEAVAAWWSRRRRSCSGADVELACAA 60
>04_04_0909 -
29312875-29313135,29313235-29313556,29313676-29313923,
29314032-29314259
Length = 352
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -3
Query: 282 LSTSMTESCGLDTEHRAMASGTARRTAGSPYLPSCPKMRVHISAP-VSSANAMT 124
L +++ES GL+ H A G + Y P CP+ + P NA+T
Sbjct: 176 LLEAISESLGLERGHMVSAMGRQAQHMAVNYYPPCPQPELTYGLPGHKDPNAIT 229
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,415,272
Number of Sequences: 37544
Number of extensions: 372879
Number of successful extensions: 1670
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1668
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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