Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0699
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome re...   244   5e-65
AF099915-9|AAC68774.1|  108|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome
            regulatory particle,non-atpase-like protein 1 protein.
          Length = 981

 Score =  244 bits (597), Expect = 5e-65
 Identities = 125/220 (56%), Positives = 159/220 (72%), Gaps = 7/220 (3%)
 Frame = +2

Query: 83   ELSSVQAVATLGVAVIALAEETGAEMCTRIFGQLGRYGEPAVRRAVPLAIALCSVSNPQL 262
            +LSS QAVA LG+ +IA+ ++ G++M  R+FG L RYGEP +RRAVPLA++L SVSNPQL
Sbjct: 704  DLSSQQAVAVLGIGLIAMGDDIGSQMALRMFGHLIRYGEPVIRRAVPLALSLLSVSNPQL 763

Query: 263  SVIDVLNKYSHDSDNDVAYNAIFAMGLVGAGTNNXXXXXXXXXXXXYHGKSPVHLFMVRL 442
            ++++ L+K+SHDSD D A+NAIFAMGLVGAGTNN            YH K  V L +VR+
Sbjct: 764  NILETLSKFSHDSDADTAHNAIFAMGLVGAGTNNARLVAMLRNLASYHYKDQVSLMLVRI 823

Query: 443  AQGLCYAGKGTVTLCPAHADRRLLNQPALAGLLVVLTAFLDC-KTIILGKSHYLLYVLAT 619
            AQGL + GKGT+TL P H+DR+LL+  ALA LL +  +FLD   TI+  + HYLLY L  
Sbjct: 824  AQGLTHLGKGTMTLNPWHSDRQLLSPSALASLLSICFSFLDANNTILNNRQHYLLYTLVL 883

Query: 620  AMQPRWLVTLDE------NLQPLNVSVRVGQAVDVIGKAG 721
            AMQPR L TL E      +L+ LNVSVRVGQAVDV+ +AG
Sbjct: 884  AMQPRMLTTLVEDEMKPGSLKQLNVSVRVGQAVDVVAQAG 923


>AF099915-9|AAC68774.1|  108|Caenorhabditis elegans Hypothetical
           protein E02H9.9 protein.
          Length = 108

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 615 RLRCNPAGWSPST---KIFSP*TSACVWDRLWMLSEKP 719
           R+RC  +G+ PST   +IFS      + +  WM+S +P
Sbjct: 3   RIRCELSGFGPSTFFSEIFSKEVDDKIGETDWMVSRRP 40


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
 Frame = -3

Query: 309 SLSESWEYLLSTSMTES--CGLDTEHRAMASGTARRTAGSPYLPSCPKMRVHISAPVSSA 136
           S ++S E  +ST  ++    G  T H    S T +    SP +P+   + V     V++ 
Sbjct: 465 SKTDSHESSVSTEASQKPLLGPPTHHYTKKSQTQKEPRYSPSIPAPTFLMVPAMMAVNTP 524

Query: 135 NAMTATPRVATACTEDSSLLASFSYPFP 52
            A   T    T CT    +   F  P P
Sbjct: 525 PATPNTKEAPTNCTSLLQVPRLFDCPSP 552


>Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 205 CRLPVPTQLSEDAGAHFGARFLGQCD 128
           CR+P+  +L+   G HF A+++G  +
Sbjct: 20  CRIPLHNELAYQHGIHFEAKYVGSME 45


>Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 205 CRLPVPTQLSEDAGAHFGARFLGQCD 128
           CR+P+  +L+   G HF A+++G  +
Sbjct: 20  CRIPLHNELAYQHGIHFEAKYVGSME 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,008,395
Number of Sequences: 27780
Number of extensions: 261889
Number of successful extensions: 880
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)