Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0698
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 33 0.044
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 29 0.72
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 27 2.2
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 5.1
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 26 5.1
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 26 6.7
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 26 6.7
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 25 8.9
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 8.9
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 25 8.9
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 33.1 bits (72), Expect = 0.044
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 587 RPFIAAHFHGNTSHLNTEVHEHYKGNGLIR--VSHGAPHDVWYPSQWTISSPPPRP 748
R +I H+ +T + + H+ GNG I V HG H + P +S PPP+P
Sbjct: 170 RLYIYNHYRDSTRQVTIVPNRHWGGNGAIGCGVGHGVLHRLPAP----LSGPPPQP 221
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 29.1 bits (62), Expect = 0.72
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 41 DKEEDKINRTTIPWEKLHDITVLEEDNIGDDED 139
D DK+ TT K D++VLEED+ +DED
Sbjct: 243 DDTTDKM--TTFTMNKFADLSVLEEDDDDEDED 273
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 27.5 bits (58), Expect = 2.2
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -2
Query: 597 INGRLCSSSSLFLTVRG-TVCI-VILAAEADSKLPKNFFDLRLSSNFVAIYGAGNRSTSG 424
+N L S SS L +R T+C I +SKLP+ L L + G+R+TSG
Sbjct: 268 VNDPLKSPSSSRLRIRNITLCADKIPRPLLNSKLPRKTLVLDLDETLIHSVSRGSRTTSG 327
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/72 (20%), Positives = 29/72 (40%)
Frame = +2
Query: 266 FKKDNELLLSNVRKIKKXXXXXXXXXXXXXXXXXXMTESSVDKRNKRSVFESSPEVDRFP 445
FK+D +LL+ + IKK + ++ + +R + E+ E++ +
Sbjct: 746 FKRDEQLLVEKIEGIKKRILLKRREVNSLESQELSVLDTEKIQTLERRISETEKELESYA 805
Query: 446 APYMATKLEERR 481
K EE R
Sbjct: 806 GQLQDAKNEEHR 817
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 611 HGNTSHLNTE--VHEHYKGNGLIRVSHGAPHDVWYPSQWTISS 733
H NT ++ + +H+ + G+ +++HG H ++ S +I S
Sbjct: 318 HANTKQVDDDPVIHDFLQNRGIKQLAHGDHHHLYLTSDHSIWS 360
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +2
Query: 8 RRQDLSTLETADKEEDKINRTTIPWEKLHDITVLEEDNIGDDEDMLDVADDPE 166
+++D L + D N+ T+ E+ +EE +GD++D +D+ DP+
Sbjct: 153 QKKDAFGLNDGFFDIDNFNKQTLALEE----EAVEEGVLGDEDDGIDLLMDPD 201
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 14 QDLSTLETADKEEDKINRTTIPWEKLHDITVLEEDNIGDDE 136
QDLS L + + T WE + + E ++GDDE
Sbjct: 803 QDLSYLSADSRYLEGTQTLTSQWEPCSWLNTVWEGDLGDDE 843
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +2
Query: 146 DVADDPESGDWYPDFDKRADKVMNSNMVH-LRPDEIADAVAFKKDNELL 289
+ A S WY ++ +V N N+VH L + V F + + L
Sbjct: 280 EAARKTTSQSWYVTYNPACKRVFNINLVHTLEHPSVVCCVKFSNNGKYL 328
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -1
Query: 700 VVGGAVRHSYQAITFVMLMNFGVQMRCVSME 608
V+G + + Y+ + F+ +FG +RC+ E
Sbjct: 690 VLGDHIAYRYEVVDFLGKGSFGQVLRCIDYE 720
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 95 DITVLEEDNIGDDEDMLDVADDPES 169
D TV+EED + D DV+DD ++
Sbjct: 315 DETVVEEDGSSGEGDWEDVSDDSDN 339
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,339
Number of Sequences: 5004
Number of extensions: 51745
Number of successful extensions: 181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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