Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0698
(760 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
J04605-1|AAA60064.1| 493|Homo sapiens prolidase protein. 31 6.0
BC130531-1|AAI30532.1| 491|Homo sapiens Cas-Br-M (murine) ecotr... 31 6.0
BC130529-1|AAI30530.1| 491|Homo sapiens Cas-Br-M (murine) ecotr... 31 6.0
BC027460-1|AAH27460.2| 488|Homo sapiens CBLL1 protein protein. 31 6.0
AK026762-1|BAB15544.1| 491|Homo sapiens protein ( Homo sapiens ... 31 6.0
AC002467-2|AAS07390.1| 491|Homo sapiens unknown protein. 31 6.0
BC121017-1|AAI21018.1| 470|Homo sapiens UPF3 regulator of nonse... 30 7.9
BC114469-1|AAI14470.1| 468|Homo sapiens tripartite motif family... 30 7.9
BC113860-1|AAI13861.1| 468|Homo sapiens tripartite motif family... 30 7.9
AY013251-1|AAG48511.1| 470|Homo sapiens hUPF3B protein. 30 7.9
AK093499-1|BAC04185.1| 468|Homo sapiens protein ( Homo sapiens ... 30 7.9
>J04605-1|AAA60064.1| 493|Homo sapiens prolidase protein.
Length = 493
Score = 30.7 bits (66), Expect = 6.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 170 GDWYPDFDKRADKVMNSNMVHL 235
GDW+PD D+ AD++ + H+
Sbjct: 323 GDWWPDIDRLADRIHLEELAHM 344
>BC130531-1|AAI30532.1| 491|Homo sapiens Cas-Br-M (murine)
ecotropic retroviral transforming sequence-like 1
protein.
Length = 491
Score = 30.7 bits (66), Expect = 6.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 644 HEHYKGNGLIRVSHGAPHDVWYPSQWTISSPPPRPTLTH 760
H H + G VSH PH + P Q PPP P ++H
Sbjct: 317 HHHPEYQGQPVVSH--PHHIMPPQQHYAPPPPPPPPISH 353
>BC130529-1|AAI30530.1| 491|Homo sapiens Cas-Br-M (murine)
ecotropic retroviral transforming sequence-like 1
protein.
Length = 491
Score = 30.7 bits (66), Expect = 6.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 644 HEHYKGNGLIRVSHGAPHDVWYPSQWTISSPPPRPTLTH 760
H H + G VSH PH + P Q PPP P ++H
Sbjct: 317 HHHPEYQGQPVVSH--PHHIMPPQQHYAPPPPPPPPISH 353
>BC027460-1|AAH27460.2| 488|Homo sapiens CBLL1 protein protein.
Length = 488
Score = 30.7 bits (66), Expect = 6.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 644 HEHYKGNGLIRVSHGAPHDVWYPSQWTISSPPPRPTLTH 760
H H + G VSH PH + P Q PPP P ++H
Sbjct: 314 HHHPEYQGQPVVSH--PHHIMPPQQHYAPPPPPPPPISH 350
>AK026762-1|BAB15544.1| 491|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23109 fis, clone LNG07754. ).
Length = 491
Score = 30.7 bits (66), Expect = 6.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 644 HEHYKGNGLIRVSHGAPHDVWYPSQWTISSPPPRPTLTH 760
H H + G VSH PH + P Q PPP P ++H
Sbjct: 317 HHHPEYQGQPVVSH--PHHIMPPQQHYAPPPPPPPPISH 353
>AC002467-2|AAS07390.1| 491|Homo sapiens unknown protein.
Length = 491
Score = 30.7 bits (66), Expect = 6.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 644 HEHYKGNGLIRVSHGAPHDVWYPSQWTISSPPPRPTLTH 760
H H + G VSH PH + P Q PPP P ++H
Sbjct: 317 HHHPEYQGQPVVSH--PHHIMPPQQHYAPPPPPPPPISH 353
>BC121017-1|AAI21018.1| 470|Homo sapiens UPF3 regulator of nonsense
transcripts homolog B (yeast) protein.
Length = 470
Score = 30.3 bits (65), Expect = 7.9
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +2
Query: 44 KEEDKINRTTIPWEKLHDITVLEEDNIGDDEDMLDVADDPESGDWYPDFDKR--ADKVMN 217
KEE+K R I EKL I + E + DE + + PE GD + DKR A K+
Sbjct: 237 KEEEKRKRKDI--EKLKKIDRIPERDKLKDEPKIKLLKKPEKGD-EKELDKREKAKKLDK 293
Query: 218 SNMVHLRPDEIADAVAFKKDNEL 286
N+ R + + + D+EL
Sbjct: 294 ENLSDERASGQSCTLPKRSDSEL 316
>BC114469-1|AAI14470.1| 468|Homo sapiens tripartite motif
family-like 1 protein.
Length = 468
Score = 30.3 bits (65), Expect = 7.9
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 545 VPRTVRNSDDEEQRRPFIAAHFHG-NTSHLNTEVHEHYK 658
+P T + D+EQ A HG N HL++E EH++
Sbjct: 98 MPTTAKALSDDEQGGSAFVAQSHGANRVHLSSEAEEHHR 136
>BC113860-1|AAI13861.1| 468|Homo sapiens tripartite motif
family-like 1 protein.
Length = 468
Score = 30.3 bits (65), Expect = 7.9
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 545 VPRTVRNSDDEEQRRPFIAAHFHG-NTSHLNTEVHEHYK 658
+P T + D+EQ A HG N HL++E EH++
Sbjct: 98 MPTTAKALSDDEQGGSAFVAQSHGANRVHLSSEAEEHHR 136
>AY013251-1|AAG48511.1| 470|Homo sapiens hUPF3B protein.
Length = 470
Score = 30.3 bits (65), Expect = 7.9
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +2
Query: 44 KEEDKINRTTIPWEKLHDITVLEEDNIGDDEDMLDVADDPESGDWYPDFDKR--ADKVMN 217
KEE+K R I EKL I + E + DE + + PE GD + DKR A K+
Sbjct: 237 KEEEKRKRKDI--EKLKKIDRIPERDKLKDEPKIKLLKKPEKGD-EKELDKREKAKKLDK 293
Query: 218 SNMVHLRPDEIADAVAFKKDNEL 286
N+ R + + + D+EL
Sbjct: 294 ENLSDERASGQSCTLPKRSDSEL 316
>AK093499-1|BAC04185.1| 468|Homo sapiens protein ( Homo sapiens
cDNA FLJ36180 fis, clone TESTI2026605, weakly similar to
52 KDA RO PROTEIN. ).
Length = 468
Score = 30.3 bits (65), Expect = 7.9
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 545 VPRTVRNSDDEEQRRPFIAAHFHG-NTSHLNTEVHEHYK 658
+P T + D+EQ A HG N HL++E EH++
Sbjct: 98 MPTTAKALSDDEQGGSAFVAQSHGANRVHLSSEAEEHHR 136
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,787,980
Number of Sequences: 237096
Number of extensions: 1900993
Number of successful extensions: 4886
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4879
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -