Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0698
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.5  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   9.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 734 ATISSTAKDXXXXXXXRETLLSSHYLCNAHELRCSDAMCFH 612
           AT ++TA         +ETL   H+L N H    S A+  H
Sbjct: 119 ATAAATATTTATGLIKQETLQRHHHLQNHHHHLQSTAVQDH 159


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 223 VRIHHFISTLVEIRIPVTA 167
           +RIHH  S    IR+ +TA
Sbjct: 118 IRIHHSGSITRSIRLTITA 136


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 223 VRIHHFISTLVEIRIPVTA 167
           +RIHH  S    IR+ +TA
Sbjct: 118 IRIHHSGSITRSIRLTITA 136


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = +2

Query: 89  LHDITVLEEDNIGDDEDMLD 148
           ++++  +EE+NI  D +++D
Sbjct: 30  IYELRQIEEENIEPDTELMD 49


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 223 VRIHHFISTLVEIRIPVTA 167
           +RIHH  S    IR+ +TA
Sbjct: 57  IRIHHSGSITRSIRLTITA 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,597
Number of Sequences: 438
Number of extensions: 3447
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)