Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0696
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    73   3e-14
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    29   0.64 
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    28   1.1  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    28   1.5  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    27   2.6  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   2.6  
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    27   3.4  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.5  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    26   4.5  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   5.9  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   7.9  

>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 73.3 bits (172), Expect = 3e-14
 Identities = 44/121 (36%), Positives = 69/121 (57%)
 Frame = +3

Query: 327 ILEKTLAVLNPFHGQSKADDANFLLRDTDIAGPIXXXXXXXXXXXXSGNKAHFGFVYGLS 506
           I +KT  VLNPF    K  D + ++ DTD+AGPI             G ++HFG++YG++
Sbjct: 71  IKQKTTHVLNPF----KHVDVH-IMDDTDMAGPILFCLLFSTFLSLHG-RSHFGYIYGIA 124

Query: 507 MMSVILMYFLLSLMSHTEGVFTILSVASVLGYCMLPMVVLAGLGIFISLEGTVGLSISAV 686
           ++  + ++F+L LMS     FT     SVLGY +LP+VV+A      +  G  G +++A+
Sbjct: 125 LLGSLSLHFVLRLMSAKNLFFT--RTVSVLGYSLLPLVVIAFFKNIFTFNGIAGYALAAL 182

Query: 687 A 689
           A
Sbjct: 183 A 183


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +3

Query: 150 TDQQNYSFDQTQGTIPANNNQYYNPNFFTPAPIPGEAT 263
           T+ QN + D++Q T     N  YNP   TP PIP  AT
Sbjct: 497 TESQNET-DESQNT----ENVDYNPQTHTPVPIPTTAT 529


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 490 NPKWALLPDRKRQTAKARQNAMGPAMSVSLSKKFAS 383
           +P W++LPD  R +   R+N M  A      KKF S
Sbjct: 115 HPLWSILPDEVRNSLLERKNVM--AFDYEQVKKFVS 148


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 114  TTAQTLDFQTFPTDQQNYSFDQTQGTIPANNN 209
            T  Q  + +T P+  +N  FD T G   AN+N
Sbjct: 1006 THVQHPNSETIPSSTENQYFDTTSGAFEANSN 1037


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -2

Query: 436 QNAMGPAMSVSLSKKFASSALDCPWKGLRTANVFSRI 326
           ++ + P+    L K ++++  D PWK   T N+ S++
Sbjct: 203 ESPINPSSITGLGKDWSTAFEDIPWKNPNTENLTSQV 239


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 329 NSIRVYFKFVQEGWLIKLI 273
           N IR YF  V++GW +KLI
Sbjct: 583 NEIRSYFPQVRDGWDLKLI 601


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -3

Query: 150 WEKFENLKSGQLFQKYLMNQKNNSDCRFAFAMHIHW 43
           W  +  L + +LF+KY   +K  +   F      HW
Sbjct: 291 WNTYGELDNSELFRKYGFTKKKGTPHDFVLIKKEHW 326


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +3

Query: 489 FVYGLSMMSVILMYFLLSLMS--HTEGVFTILSVASVLGYCMLPMV 620
           +++G+S +  I +   +S  S  HT+ VF  +S  S++GYC+  MV
Sbjct: 378 WLFGISPIPYICILSCISSNSAGHTKKVF--MSAVSMIGYCVGNMV 421


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 468 GNKAHFGFVYGLSMMSVILMYFLLSLMSHTEGVFTIL-SVASVLGYCMLPMVVL 626
           GN+  F   Y   + S  + Y L + + + +GVF    + + + G+  +P+V +
Sbjct: 301 GNRISFEREYFDLIRSAFMKYSLQARLGYMQGVFVAYHNTSDIFGFQYIPLVAM 354



 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 528 TSI*QTSLTVHTQTQNGLYCLIEKGK 451
           T + +++ +VH   QNGLYC I+K K
Sbjct: 170 TRLCRSASSVHISYQNGLYC-IDKDK 194


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 110  WNNCPDFRFSNFSHGSTELF 169
            W+N PD+ F  F H    LF
Sbjct: 1137 WSNPPDYDFDRFPHALLALF 1156


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 661 VPSKEINIPKPAKTTIGSIQ*PSTL 587
           +PS EI+   PA TT+ S   P T+
Sbjct: 201 LPSSEISTKAPASTTVSSSVDPGTI 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,827
Number of Sequences: 5004
Number of extensions: 59950
Number of successful extensions: 181
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)