Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0696
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0634 + 9986742-9987512                                           61   9e-10
10_07_0071 - 12597668-12597784,12597966-12598166,12598804-12599601     34   0.093
01_06_1648 - 38897268-38897480,38897816-38897884,38899712-38900038     28   8.1  

>03_02_0634 + 9986742-9987512
          Length = 256

 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
 Frame = +3

Query: 324 RILEKTLAVLNPFHGQSKADDANFLLRDTDIAGPIXXXXXXXXXXXXSGNKAHFGFVYGL 503
           +I  KTL++L+P      AD +  L  D D++GP             +G K HFG V G 
Sbjct: 97  QIWRKTLSILHPLRS---ADPS--LHADADLSGPFLFLLSFGLFQLLAG-KFHFGIVLGW 150

Query: 504 SMMSVILMYFLLSLMSH-TEGVFTILSVASVLGYCMLPMVVLAGLGIFISLEG 659
             ++ + +YF+ S++S    G   +    S++GYCMLPMV+ + + +F+   G
Sbjct: 151 VTVASLFLYFVFSMLSGGRRGDLDLYRCVSLVGYCMLPMVIFSAISLFLPRGG 203


>10_07_0071 - 12597668-12597784,12597966-12598166,12598804-12599601
          Length = 371

 Score = 34.3 bits (75), Expect = 0.093
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = +3

Query: 504 SMMSVILMYFLLSLMSHTEGVFTILSVASVLGYCMLPMV--VLAGLGI 641
           S  S++LM++L S +SH    FT ++ A  L +C+ P V  V + LG+
Sbjct: 65  SSCSLLLMFYLFSSVSHLVTAFTAVASAMALFFCLSPYVNCVRSRLGV 112


>01_06_1648 - 38897268-38897480,38897816-38897884,38899712-38900038
          Length = 202

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = +3

Query: 468 GNKAHFGFVYGLSMMSVILMYFLLSLMSHTEGVFTILSVASVLGYCMLPMVVLAGLGIFI 647
           G +    F+ G+ ++ +   Y  + L +H   + T+L    V    ++ +   AGL IF 
Sbjct: 127 GPRGQMTFLVGMGLVLITSFYLTVILDAHPP-LITVLLFVPVTVLVIVAVCACAGLAIFC 185

Query: 648 SLEGTV 665
             EG +
Sbjct: 186 FEEGQI 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,784,610
Number of Sequences: 37544
Number of extensions: 349659
Number of successful extensions: 756
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)