Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0696
(692 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74031-15|CAE45046.1| 261|Caenorhabditis elegans Hypothetical p... 81 6e-16
Z75955-1|CAB00111.2| 796|Caenorhabditis elegans Hypothetical pr... 33 0.15
AF328908-1|AAK01123.1| 796|Caenorhabditis elegans voltage-gated... 33 0.15
AF319616-1|AAG49526.1| 796|Caenorhabditis elegans CLC-type chlo... 33 0.15
Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical pr... 28 0.28
Z81137-10|CAB03470.2| 232|Caenorhabditis elegans Hypothetical p... 29 2.4
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 28 5.5
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 28 5.5
U28737-5|AAA68274.1| 684|Caenorhabditis elegans Na/h exchanger ... 28 5.5
U28737-4|AAM48522.1| 749|Caenorhabditis elegans Na/h exchanger ... 28 5.5
AF497827-1|AAM18105.1| 684|Caenorhabditis elegans putative Na-H... 28 5.5
AF497826-1|AAM18104.1| 749|Caenorhabditis elegans putative Na-H... 28 5.5
AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase... 28 5.5
AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying de... 28 5.5
AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying de... 28 5.5
U70849-1|AAF99923.1| 381|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z81532-2|CAB04324.1| 290|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein. 27 9.6
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein... 27 9.6
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein... 27 9.6
L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr... 27 9.6
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical... 27 9.6
AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase... 27 9.6
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ... 27 9.6
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ... 27 9.6
>Z74031-15|CAE45046.1| 261|Caenorhabditis elegans Hypothetical
protein F32D8.14 protein.
Length = 261
Score = 81.4 bits (192), Expect = 6e-16
Identities = 58/180 (32%), Positives = 85/180 (47%), Gaps = 1/180 (0%)
Frame = +3
Query: 156 QQNYSFDQTQGTIPANNNQYYNPNFFTPA-PIPGEATSXXXXXXXXXXXXXXXXXXXRIL 332
QQN + Q Q Q + PN T A P G A I
Sbjct: 49 QQNQQYQQPQTNY--YGGQMFMPNNGTGAIPNAGVAADGEDYENEPPLLEELGINFSHIK 106
Query: 333 EKTLAVLNPFHGQSKADDANFLLRDTDIAGPIXXXXXXXXXXXXSGNKAHFGFVYGLSMM 512
EKT+AVLNP G + + ++ D D+AGP+ G K FGF+YG+ +
Sbjct: 107 EKTIAVLNPT-GSATVE----VIADQDLAGPLVFCLLFGAALLLHG-KLSFGFIYGVGGL 160
Query: 513 SVILMYFLLSLMSHTEGVFTILSVASVLGYCMLPMVVLAGLGIFISLEGTVGLSISAVAV 692
+ +Y L++LM+ E + ASVLGYC+LPM +L+ + +S +G +G IS++AV
Sbjct: 161 GCVGIYALMNLMATDEKNISFTCTASVLGYCLLPMALLSIVTAVLSFKGIIGYIISSLAV 220
>Z75955-1|CAB00111.2| 796|Caenorhabditis elegans Hypothetical
protein R07B7.1 protein.
Length = 796
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = -1
Query: 314 YFKFVQEGWLIKLIRLTCSFSRYGSRCKKIWIVVLVVVCWNCALRLIKGIVLL 156
Y K ++ W++K + C + G+ +W V++ + +NC L I I+++
Sbjct: 126 YSKDIKFNWILKYLLSKCGEEQRGTTAGCMWTVMIAWIGYNCVLVTIAAILVI 178
>AF328908-1|AAK01123.1| 796|Caenorhabditis elegans voltage-gated
chloride channelCLH-6 protein.
Length = 796
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = -1
Query: 314 YFKFVQEGWLIKLIRLTCSFSRYGSRCKKIWIVVLVVVCWNCALRLIKGIVLL 156
Y K ++ W++K + C + G+ +W V++ + +NC L I I+++
Sbjct: 126 YSKDIKFNWILKYLLSKCGEEQRGTTAGCMWTVMIAWIGYNCVLVTIAAILVI 178
>AF319616-1|AAG49526.1| 796|Caenorhabditis elegans CLC-type
chloride channel CLH-6 protein.
Length = 796
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = -1
Query: 314 YFKFVQEGWLIKLIRLTCSFSRYGSRCKKIWIVVLVVVCWNCALRLIKGIVLL 156
Y K ++ W++K + C + G+ +W V++ + +NC L I I+++
Sbjct: 126 YSKDIKFNWILKYLLSKCGEEQRGTTAGCMWTVMIAWIGYNCVLVTIAAILVI 178
>Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical
protein T23F1.6 protein.
Length = 330
Score = 28.3 bits (60), Expect(2) = 0.28
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +3
Query: 111 GTTAQTLDFQTFPTDQQNYSFDQTQGTIPANNNQYYNPN 227
G+T + P +Q Y QG N NQY NPN
Sbjct: 153 GSTGNMMYNNQDPYNQMQYGGYNQQGNQYQNQNQYQNPN 191
Score = 23.0 bits (47), Expect(2) = 0.28
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +3
Query: 201 NNNQYYNPNFFTP 239
N NQY N N++ P
Sbjct: 198 NQNQYQNQNYYNP 210
>Z81137-10|CAB03470.2| 232|Caenorhabditis elegans Hypothetical
protein W02D9.2 protein.
Length = 232
Score = 29.5 bits (63), Expect = 2.4
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Frame = +3
Query: 384 DANFLLRDTDIAGPIXXXXXXXXXXXXSG---NKAHFGFVYGLSMMSVILMYFLLSLMSH 554
D LLRD D+ GP+ +G + F V+ ++ +++ + L+
Sbjct: 86 DKQQLLRDWDLWGPLFICVGLALLLQHNGGTESAPQFTQVFTITFFGSVIVTANIKLLGG 145
Query: 555 TEGVFTILSVASVLGYCMLPMVVLAGL 635
F L V +GYC+LP V A L
Sbjct: 146 NISFFQSLCV---IGYCLLPPFVAAVL 169
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 108 FGTTAQTLDFQTFPTDQQNYSFDQTQGTIPANNNQYYNPNF 230
FG ++ DFQ + +F Q Q + NN+ +NPNF
Sbjct: 171 FGQPSELPDFQPNNNFKYGNNFGQNQNSNNNNNDFNWNPNF 211
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 108 FGTTAQTLDFQTFPTDQQNYSFDQTQGTIPANNNQYYNPNF 230
FG ++ DFQ + +F Q Q + NN+ +NPNF
Sbjct: 171 FGQPSELPDFQPNNNFKYGNNFGQNQNSNNNNNDFNWNPNF 211
>U28737-5|AAA68274.1| 684|Caenorhabditis elegans Na/h exchanger
protein 4, isoform b protein.
Length = 684
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/73 (20%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Frame = +3
Query: 474 KAHFGFVYGLSM----MSVILMYFLLSLMSHTEGVFTILSVASVLGYCMLPMVVLAGLGI 641
K+ F ++G S+ ++++L ++++ ++ +L++ SV+G C++ +++ G G+
Sbjct: 183 KSLFILIFGESLCNDAVTIVLYRTSINVIKTSDASDEMLTITSVVGSCVVQFMIVCGFGL 242
Query: 642 FI-SLEGTVGLSI 677
++ G G+ I
Sbjct: 243 LCGAVVGFAGVFI 255
>U28737-4|AAM48522.1| 749|Caenorhabditis elegans Na/h exchanger
protein 4, isoform a protein.
Length = 749
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/73 (20%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Frame = +3
Query: 474 KAHFGFVYGLSM----MSVILMYFLLSLMSHTEGVFTILSVASVLGYCMLPMVVLAGLGI 641
K+ F ++G S+ ++++L ++++ ++ +L++ SV+G C++ +++ G G+
Sbjct: 248 KSLFILIFGESLCNDAVTIVLYRTSINVIKTSDASDEMLTITSVVGSCVVQFMIVCGFGL 307
Query: 642 FI-SLEGTVGLSI 677
++ G G+ I
Sbjct: 308 LCGAVVGFAGVFI 320
>AF497827-1|AAM18105.1| 684|Caenorhabditis elegans putative Na-H
exchanger isoform 4b protein.
Length = 684
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/73 (20%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Frame = +3
Query: 474 KAHFGFVYGLSM----MSVILMYFLLSLMSHTEGVFTILSVASVLGYCMLPMVVLAGLGI 641
K+ F ++G S+ ++++L ++++ ++ +L++ SV+G C++ +++ G G+
Sbjct: 183 KSLFILIFGESLCNDAVTIVLYRTSINVIKTSDASDEMLTITSVVGSCVVQFMIVCGFGL 242
Query: 642 FI-SLEGTVGLSI 677
++ G G+ I
Sbjct: 243 LCGAVVGFAGVFI 255
>AF497826-1|AAM18104.1| 749|Caenorhabditis elegans putative Na-H
exchanger isoform 4a protein.
Length = 749
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/73 (20%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Frame = +3
Query: 474 KAHFGFVYGLSM----MSVILMYFLLSLMSHTEGVFTILSVASVLGYCMLPMVVLAGLGI 641
K+ F ++G S+ ++++L ++++ ++ +L++ SV+G C++ +++ G G+
Sbjct: 248 KSLFILIFGESLCNDAVTIVLYRTSINVIKTSDASDEMLTITSVVGSCVVQFMIVCGFGL 307
Query: 642 FI-SLEGTVGLSI 677
++ G G+ I
Sbjct: 308 LCGAVVGFAGVFI 320
>AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase C
beta homolog EGL-8 protein.
Length = 1431
Score = 28.3 bits (60), Expect = 5.5
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Frame = -2
Query: 598 PSTLATLRIVKT-PSV*LISESKKYINITDIIDSPYTNPKWALLPDRKRQTAKARQNAM- 425
PS +L +++T P+V S + + +D+P + ++PDR TA + +NA+
Sbjct: 556 PSVQTSLNVMRTIPTVNTTSNNGSNRSARSSLDTPSPSGGSLMVPDRATSTATSIKNAVL 615
Query: 424 --GPAMSVSLSKKFASSALDCPWKGLRTAN 341
P S SL +K + P G + A+
Sbjct: 616 ARSPNFS-SLRQKLSFKRRQSPLAGDQRAH 644
>AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying
defective protein 8,isoform a protein.
Length = 1419
Score = 28.3 bits (60), Expect = 5.5
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Frame = -2
Query: 598 PSTLATLRIVKT-PSV*LISESKKYINITDIIDSPYTNPKWALLPDRKRQTAKARQNAM- 425
PS +L +++T P+V S + + +D+P + ++PDR TA + +NA+
Sbjct: 556 PSVQTSLNVMRTIPTVNTTSNNGSNRSARSSLDTPSPSGGSLMVPDRATSTATSIKNAVL 615
Query: 424 --GPAMSVSLSKKFASSALDCPWKGLRTAN 341
P S SL +K + P G + A+
Sbjct: 616 ARSPNFS-SLRQKLSFKRRQSPLAGDQRAH 644
>AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying
defective protein 8,isoform b protein.
Length = 1431
Score = 28.3 bits (60), Expect = 5.5
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Frame = -2
Query: 598 PSTLATLRIVKT-PSV*LISESKKYINITDIIDSPYTNPKWALLPDRKRQTAKARQNAM- 425
PS +L +++T P+V S + + +D+P + ++PDR TA + +NA+
Sbjct: 556 PSVQTSLNVMRTIPTVNTTSNNGSNRSARSSLDTPSPSGGSLMVPDRATSTATSIKNAVL 615
Query: 424 --GPAMSVSLSKKFASSALDCPWKGLRTAN 341
P S SL +K + P G + A+
Sbjct: 616 ARSPNFS-SLRQKLSFKRRQSPLAGDQRAH 644
>U70849-1|AAF99923.1| 381|Caenorhabditis elegans Hypothetical
protein F29B9.8 protein.
Length = 381
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -3
Query: 180 SDQRNSSVDPWEKFENLKSGQLFQKYLMNQKNNSDCRFAFAMHIHWD 40
S + N +V W+K+ G++ QKY Q D F+ ++ D
Sbjct: 132 SPRANDTVTDWQKYAVDGFGEILQKYTTYQVYTKDQLFSIVSYVAGD 178
>Z81532-2|CAB04324.1| 290|Caenorhabditis elegans Hypothetical
protein F36F2.2 protein.
Length = 290
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 489 TQNGLYCLIEKGKLPRLGRMLWDQQC 412
T+ +Y IE K +G +WDQQC
Sbjct: 237 TETSIYMYIEMDK-QNVGEFVWDQQC 261
>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 27.5 bits (58), Expect = 9.6
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Frame = -2
Query: 670 RPTVPSKEINIPKPAKTTIGSIQ*PSTLATLRIVK-TPSV*LISESKKYINITDIIDSPY 494
RPTVP + I P P T+ ++ ++ I K T V L+ + K D + P
Sbjct: 694 RPTVPQQFIKAPAPKPITLQAV--VCSIPEKEIKKETEDVALLEKIKDEPLDEDDFNHPS 751
Query: 493 TNPKWALLPDRKRQTAKARQNAMGPAMSVSLSKKFASSALDCP 365
T+P +P+ R TA ++ + P V L+ K +S P
Sbjct: 752 TDP----VPN--RTTASSQGPSSYPRKIVVLASKLPTSQSSSP 788
>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 27.5 bits (58), Expect = 9.6
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Frame = -2
Query: 670 RPTVPSKEINIPKPAKTTIGSIQ*PSTLATLRIVK-TPSV*LISESKKYINITDIIDSPY 494
RPTVP + I P P T+ ++ ++ I K T V L+ + K D + P
Sbjct: 694 RPTVPQQFIKAPAPKPITLQAV--VCSIPEKEIKKETEDVALLEKIKDEPLDEDDFNHPS 751
Query: 493 TNPKWALLPDRKRQTAKARQNAMGPAMSVSLSKKFASSALDCP 365
T+P +P+ R TA ++ + P V L+ K +S P
Sbjct: 752 TDP----VPN--RTTASSQGPSSYPRKIVVLASKLPTSQSSSP 788
>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
Length = 1440
Score = 27.5 bits (58), Expect = 9.6
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Frame = -2
Query: 670 RPTVPSKEINIPKPAKTTIGSIQ*PSTLATLRIVK-TPSV*LISESKKYINITDIIDSPY 494
RPTVP + I P P T+ ++ ++ I K T V L+ + K D + P
Sbjct: 694 RPTVPQQFIKAPAPKPITLQAV--VCSIPEKEIKKETEDVALLEKIKDEPLDEDDFNHPS 751
Query: 493 TNPKWALLPDRKRQTAKARQNAMGPAMSVSLSKKFASSALDCP 365
T+P +P+ R TA ++ + P V L+ K +S P
Sbjct: 752 TDP----VPN--RTTASSQGPSSYPRKIVVLASKLPTSQSSSP 788
>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 27.5 bits (58), Expect = 9.6
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Frame = -2
Query: 670 RPTVPSKEINIPKPAKTTIGSIQ*PSTLATLRIVK-TPSV*LISESKKYINITDIIDSPY 494
RPTVP + I P P T+ ++ ++ I K T V L+ + K D + P
Sbjct: 694 RPTVPQQFIKAPAPKPITLQAV--VCSIPEKEIKKETEDVALLEKIKDEPLDEDDFNHPS 751
Query: 493 TNPKWALLPDRKRQTAKARQNAMGPAMSVSLSKKFASSALDCP 365
T+P +P+ R TA ++ + P V L+ K +S P
Sbjct: 752 TDP----VPN--RTTASSQGPSSYPRKIVVLASKLPTSQSSSP 788
>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 27.5 bits (58), Expect = 9.6
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Frame = -2
Query: 670 RPTVPSKEINIPKPAKTTIGSIQ*PSTLATLRIVK-TPSV*LISESKKYINITDIIDSPY 494
RPTVP + I P P T+ ++ ++ I K T V L+ + K D + P
Sbjct: 694 RPTVPQQFIKAPAPKPITLQAV--VCSIPEKEIKKETEDVALLEKIKDEPLDEDDFNHPS 751
Query: 493 TNPKWALLPDRKRQTAKARQNAMGPAMSVSLSKKFASSALDCP 365
T+P +P+ R TA ++ + P V L+ K +S P
Sbjct: 752 TDP----VPN--RTTASSQGPSSYPRKIVVLASKLPTSQSSSP 788
>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical protein
C50C3.2 protein.
Length = 2107
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 159 VDPW-EKFENLKSGQLFQKYLMNQKNNSDCRFAFAMHIHWDC 37
+DPW E+ N+++ + + ++ K + CRFA + DC
Sbjct: 1097 MDPWLERVSNIENNLVKARETIDTKQDDLCRFADILGAERDC 1138
>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
protein Y43F8B.3a protein.
Length = 1816
Score = 27.5 bits (58), Expect = 9.6
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Frame = +2
Query: 488 VCVWTVNDVCYIDVFFTFTNESYRRCFYYS*CCQCTGLLYASYGCLSRFRNIYLFRRYCR 667
VC + D C + V N R FY S QC Y G N +L R +C
Sbjct: 569 VCCQSEGDPCSLVVKEGSGNHHLSRWFYNSNTRQCQPFTYTGQG---GNENNFLLREHCE 625
Query: 668 ---PQYISCC 688
P +I+ C
Sbjct: 626 ATCPVWINAC 635
>AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase C
beta protein.
Length = 1418
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -2
Query: 598 PSTLATLRIVKT-PSV*LISESKKYINITDIIDSPYTNPKWALLPDRKRQTAKARQNAM 425
PS +L +++T P+V S + + +D+P + ++PDR TA + +NA+
Sbjct: 554 PSVQTSLNVMRTIPTVNTTSNNGSNRSARSSLDTPSPSGGSLMVPDRATSTATSIKNAV 612
>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 6, isoform
a protein.
Length = 1650
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = -2
Query: 541 ESKKYINITDIIDSPYTNPKWALLPDRKRQTAKARQNAMGPAMSVSLSKKFASSALDC 368
+ ++I ++ + YT P+W++L Q + R N A ++SL + +A++ C
Sbjct: 599 QQPQHIRMSALHQIIYTQPEWSVLSQIGNQLRQER-NQQVRAFTLSLLRSYANNESPC 655
>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 6, isoform
c protein.
Length = 1651
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = -2
Query: 541 ESKKYINITDIIDSPYTNPKWALLPDRKRQTAKARQNAMGPAMSVSLSKKFASSALDC 368
+ ++I ++ + YT P+W++L Q + R N A ++SL + +A++ C
Sbjct: 599 QQPQHIRMSALHQIIYTQPEWSVLSQIGNQLRQER-NQQVRAFTLSLLRSYANNESPC 655
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,579,225
Number of Sequences: 27780
Number of extensions: 328616
Number of successful extensions: 978
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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