Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0689
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    27   3.6  
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|...    26   4.7  
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    26   4.7  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.3  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    25   8.3  

>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -1

Query: 345 DPGIDAGESSL--SAFLAEGDHSDLVEVGLVGLRVPNGLHQRAPAVPLTGVLAPLLVPSA 172
           +PG  A    L   AF A+G  S +    + G RVP+   Q    +P T V  P   P+A
Sbjct: 347 NPGAPAPPGGLLRQAFQAQG--SSIQPSEITGRRVPHRYAQDGNTLPYTPVFPPESAPAA 404


>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = +1

Query: 100 VVSNDFCAQA--YSPYKNQKID 159
           +V NDF A A  Y+PY ++KID
Sbjct: 30  IVYNDFYAHAVSYNPYPSEKID 51


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -1

Query: 393 SRMTHNLLLDPGNEVRDPGIDAGESSLSAFLAEGDHSDLVEVGLV 259
           +R   N +L PG +  D GI   +S  SA       S L   G+V
Sbjct: 252 TRPASNAILQPGFKFEDMGIGGLDSEFSAIFRRAFASRLFPPGMV 296


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 196 KDACQGDSGGPLMQPIWNSQTYKTYFY 276
           K  C  D   P+  PI +  TYK Y Y
Sbjct: 910 KKFCNSDCELPVRSPIVSMSTYKDYVY 936


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 168 HPLIDLLILIWRVRLSTKVVAD 103
           HPL+D     WRV  STK++ +
Sbjct: 176 HPLLDPYKYYWRVEPSTKLLCE 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,921
Number of Sequences: 5004
Number of extensions: 53760
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)