Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0687
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 158 9e-40
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 113 2e-26
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 105 5e-24
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 94 2e-20
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 93 3e-20
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 85 1e-17
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 84 2e-17
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 84 2e-17
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 83 3e-17
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 77 3e-15
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 74 2e-14
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 69 5e-13
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 68 2e-12
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 67 2e-12
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 66 5e-12
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 66 5e-12
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 64 1e-11
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 64 1e-11
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 64 1e-11
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 62 8e-11
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 61 1e-10
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 60 2e-10
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 58 2e-09
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 53 4e-08
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 50 4e-07
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 50 4e-07
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 47 3e-06
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 46 7e-06
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 42 9e-05
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 35 0.014
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 32 0.096
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 29 0.68
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 4.8
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 25 8.4
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 25 8.4
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 158 bits (383), Expect = 9e-40
Identities = 78/145 (53%), Positives = 102/145 (70%)
Frame = +3
Query: 21 FQATR*HRSMGDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDV 200
F AT H GDR QRERE AL FR+G+T I+VATAVA+RGLDIP+V HVIN+DLP+D+
Sbjct: 455 FPATSIH---GDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDI 511
Query: 201 EEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVPNWLTSTAADXXXXX 380
++YVHRIGRTGR GN G A +FFN N+G+A++L+ELL EA Q+ P++L + A +
Sbjct: 512 DDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQECPSFLIAMARESSFGG 571
Query: 381 XXXXXXXXXXNARYGGSGFGSRDFR 455
R GG+ +G+RDFR
Sbjct: 572 NGRGGRYSGRGGR-GGNAYGARDFR 595
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 113 bits (272), Expect = 2e-26
Identities = 51/95 (53%), Positives = 68/95 (71%)
Frame = +3
Query: 51 GDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRT 230
GD+ Q ER+ L FRTG++PI+VAT VA+RG+D+ + HV N+D P + E+YVHRIGRT
Sbjct: 401 GDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRT 460
Query: 231 GRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDV 335
GR G G A ++F N AR+LV +L EAKQD+
Sbjct: 461 GRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDI 495
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 105 bits (253), Expect = 5e-24
Identities = 52/99 (52%), Positives = 67/99 (67%)
Frame = +3
Query: 51 GDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRT 230
GD +Q R AL F++G+ P+LVAT VAARGLDIP V+ VIN P +E+YVHRIGRT
Sbjct: 448 GDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRT 507
Query: 231 GRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVPNWL 347
GR G A +FF ++ A +LV +L +AKQD+P L
Sbjct: 508 GRANTKGTAITFFTPQDKSHAGELVNVLRQAKQDIPEGL 546
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 93.9 bits (223), Expect = 2e-20
Identities = 43/99 (43%), Positives = 63/99 (63%)
Frame = +3
Query: 51 GDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRT 230
G+ Q +RE+AL +FR G+ +L+AT + ARG+D V+ VINFD P V Y+HRIGRT
Sbjct: 320 GELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRT 379
Query: 231 GRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVPNWL 347
GR GN G A +FF + + + ++ + +VPNW+
Sbjct: 380 GRAGNTGQAVTFFTKEDGEYIKLIAGVMRSSGCEVPNWV 418
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 93.5 bits (222), Expect = 3e-20
Identities = 41/104 (39%), Positives = 67/104 (64%)
Frame = +3
Query: 51 GDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRT 230
G ++Q +R+ + ++ G +L+AT+V ARGLD+ ++ V+N+D P+ +E+YVHR+GRT
Sbjct: 700 GGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRT 759
Query: 231 GRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVPNWLTSTAA 362
GR G+ GVA +F A D+ + L +KQ VP L + A+
Sbjct: 760 GRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVPKELQTLAS 803
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 84.6 bits (200), Expect = 1e-17
Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Frame = +3
Query: 51 GDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRT 230
G ++Q +RE A+ + R ILVAT +A RG+DIP+V V+N+++ +E+Y HRIGRT
Sbjct: 548 GSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRT 607
Query: 231 GRMGNLGVATSFFNDTNRGLARDLVELLV-EAKQDVPNWLTSTAA 362
GR G G A +F + + DL LL AK +P+ L + A
Sbjct: 608 GRAGKSGTAITFLGPEDTDVYYDLRVLLSRSAKAHIPDELRNHEA 652
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 83.8 bits (198), Expect = 2e-17
Identities = 37/96 (38%), Positives = 61/96 (63%)
Frame = +3
Query: 51 GDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRT 230
GD +Q +R+ + FRTG + IL+ T + ARG+D+ V VIN+DLP++ E Y+HRIGR
Sbjct: 290 GDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRG 349
Query: 231 GRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVP 338
GR G GV+ +F + + + R++ + +++P
Sbjct: 350 GRFGRKGVSINFVTNDDVRMMREIEQFYNTHIEEMP 385
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 83.8 bits (198), Expect = 2e-17
Identities = 37/96 (38%), Positives = 61/96 (63%)
Frame = +3
Query: 51 GDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRT 230
G+ Q+ER+ ++ FR G + +L+ T + ARG+D+ V VIN+DLP++ E Y+HRIGR+
Sbjct: 292 GEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRS 351
Query: 231 GRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDVP 338
GR G GVA +F + + + RD+ + ++P
Sbjct: 352 GRFGRKGVAINFVTNEDVRILRDIEQYYSTVIDEMP 387
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 83.4 bits (197), Expect = 3e-17
Identities = 40/71 (56%), Positives = 50/71 (70%)
Frame = +3
Query: 63 QREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMG 242
QRER ++L RFR ILVAT VA+RGLDIP V+ VINFDLP D ++Y+HR+GRT R G
Sbjct: 294 QRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAG 353
Query: 243 NLGVATSFFND 275
G + S +
Sbjct: 354 RSGESISIVTE 364
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 76.6 bits (180), Expect = 3e-15
Identities = 36/67 (53%), Positives = 46/67 (68%)
Frame = +3
Query: 51 GDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRT 230
G +Q R AL +F++G LVAT VAARGLDIP V VIN+D+P+D + Y+HR+GRT
Sbjct: 317 GQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRT 376
Query: 231 GRMGNLG 251
R G G
Sbjct: 377 ARAGRAG 383
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 74.1 bits (174), Expect = 2e-14
Identities = 36/84 (42%), Positives = 50/84 (59%)
Frame = +3
Query: 51 GDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRT 230
G +Q R + + FR G+T +LV T VA+RG+DIP + +VIN+D P + +VHR+GRT
Sbjct: 378 GSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRT 437
Query: 231 GRMGNLGVATSFFNDTNRGLARDL 302
R G G A S + G DL
Sbjct: 438 ARAGRTGWAYSLVRAEDAGYLLDL 461
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 69.3 bits (162), Expect = 5e-13
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 6/81 (7%)
Frame = +3
Query: 51 GDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLP------SDVEEYV 212
G+ +R+ + FR G + +LV T V ARG+D+ V V+N+D+P D + Y+
Sbjct: 384 GNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYL 443
Query: 213 HRIGRTGRMGNLGVATSFFND 275
HRIGRTGR G +GV+ +F +D
Sbjct: 444 HRIGRTGRFGRVGVSINFVHD 464
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 67.7 bits (158), Expect = 2e-12
Identities = 33/74 (44%), Positives = 43/74 (58%)
Frame = +3
Query: 63 QREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMG 242
Q R FR G LV + + RG+DI V VINFD P + E Y+HRIGR+GR G
Sbjct: 317 QSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFG 376
Query: 243 NLGVATSFFNDTNR 284
+ G+A SF + +R
Sbjct: 377 HRGLAISFISWADR 390
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 67.3 bits (157), Expect = 2e-12
Identities = 33/78 (42%), Positives = 48/78 (61%)
Frame = +3
Query: 51 GDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRT 230
G +Q +R AL FR G+ L+AT VA+RG+DI + VIN++ P+ E Y+HR+GRT
Sbjct: 536 GSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRT 595
Query: 231 GRMGNLGVATSFFNDTNR 284
R G G A + + +R
Sbjct: 596 ARAGRSGRAITLAGEGDR 613
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 66.1 bits (154), Expect = 5e-12
Identities = 30/66 (45%), Positives = 43/66 (65%)
Frame = +3
Query: 60 NQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRM 239
+Q++R +L +F+ +LV T VAARG+DIP V HVI++ +P + YVHR GRT R
Sbjct: 424 DQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARA 483
Query: 240 GNLGVA 257
GV+
Sbjct: 484 NEDGVS 489
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 66.1 bits (154), Expect = 5e-12
Identities = 30/63 (47%), Positives = 41/63 (65%)
Frame = +3
Query: 69 EREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNL 248
ER+ + RF TG +LV + + ARG+D+ + ++VIN+D P V YVHRIGRT R G
Sbjct: 475 ERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGRE 534
Query: 249 GVA 257
G A
Sbjct: 535 GFA 537
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 64.5 bits (150), Expect = 1e-11
Identities = 31/72 (43%), Positives = 41/72 (56%)
Frame = +3
Query: 51 GDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRT 230
G Q ER + F+ I VAT V RG+DI V VIN+D+P + Y+HR+GR
Sbjct: 327 GGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRA 386
Query: 231 GRMGNLGVATSF 266
GR G G+A +F
Sbjct: 387 GRFGTKGLAITF 398
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 64.5 bits (150), Expect = 1e-11
Identities = 29/63 (46%), Positives = 39/63 (61%)
Frame = +3
Query: 69 EREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNL 248
+R FR Q+ IL AT V ARG+D P++ V+ PS+ ++Y+HRIGRTGR G
Sbjct: 331 QRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKT 390
Query: 249 GVA 257
G A
Sbjct: 391 GEA 393
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 64.5 bits (150), Expect = 1e-11
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Frame = +3
Query: 39 HRSMGDRNQREREDALRRFRTGQ---TPILVATAVAARGLDIPHVRHVINFDLPSDVEEY 209
+R G +Q+ R L F + + + IL+ T VAARGLD+P+V V+ +D P ++Y
Sbjct: 471 YRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDY 530
Query: 210 VHRIGRTGRMGNLGVATSF 266
+HRIGRT R G+ G A F
Sbjct: 531 LHRIGRTARAGHNGAAIMF 549
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 62.1 bits (144), Expect = 8e-11
Identities = 30/71 (42%), Positives = 41/71 (57%)
Frame = +3
Query: 51 GDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRT 230
G + Q+ R + F + IL+ T VAARGLDIP V ++ +D P D +Y+HR+GRT
Sbjct: 368 GKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRT 427
Query: 231 GRMGNLGVATS 263
R G G S
Sbjct: 428 AR-GTKGTGKS 437
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 61.3 bits (142), Expect = 1e-10
Identities = 28/69 (40%), Positives = 38/69 (55%)
Frame = +3
Query: 51 GDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRT 230
G + Q R + +F + + +L T + ARGLD P V VI D P DV+ Y+HR+GRT
Sbjct: 317 GKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRT 376
Query: 231 GRMGNLGVA 257
R G A
Sbjct: 377 ARYNRSGNA 385
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 60.5 bits (140), Expect = 2e-10
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +3
Query: 51 GDRNQREREDALRRFR-TGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGR 227
G + Q R +F+ + + +L T +A+RGLDIP+V V+ D P D + + HR GR
Sbjct: 290 GQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGR 349
Query: 228 TGRMGNLGVATSFFND 275
GR G GVA ND
Sbjct: 350 AGRAGRAGVAIVLLND 365
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 57.6 bits (133), Expect = 2e-09
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = +3
Query: 138 ARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSF 266
ARGLD +V V+NFD+PS+ + Y+HRIGRT R G G A SF
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSF 429
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 53.2 bits (122), Expect = 4e-08
Identities = 24/60 (40%), Positives = 37/60 (61%)
Frame = +3
Query: 66 REREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGN 245
R ++D L +F+TG+ +L+ATAVA G+D+P VI F++ V +YV GR M +
Sbjct: 410 RRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGRARAMAS 469
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 49.6 bits (113), Expect = 4e-07
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +3
Query: 51 GDRNQREREDALRRFRT--GQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIG 224
GD + ER+ FR G+T I++AT G++ VR V+++ LP+ +YV G
Sbjct: 1451 GDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETG 1510
Query: 225 RTGRMGNLGVATSFF 269
R GR G +A F+
Sbjct: 1511 RAGRDGKYAIAALFY 1525
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 49.6 bits (113), Expect = 4e-07
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +3
Query: 51 GDRNQREREDALRRFRT--GQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIG 224
GD + ER+ FR G+T I++AT G++ VR V+++ LP+ +YV G
Sbjct: 1451 GDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETG 1510
Query: 225 RTGRMGNLGVATSFF 269
R GR G +A F+
Sbjct: 1511 RAGRDGKYAIAALFY 1525
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 46.8 bits (106), Expect = 3e-06
Identities = 28/75 (37%), Positives = 42/75 (56%)
Frame = +3
Query: 12 IFIFQATR*HRSMGDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLP 191
+FI QA + S G NQ ++++ + +FR G LVAT++ GLDI +I +D
Sbjct: 502 LFIGQANSAY-STG-MNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDAS 559
Query: 192 SDVEEYVHRIGRTGR 236
S + R+GRTGR
Sbjct: 560 SSPIRTIQRMGRTGR 574
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 45.6 bits (103), Expect = 7e-06
Identities = 24/75 (32%), Positives = 42/75 (56%)
Frame = +3
Query: 12 IFIFQATR*HRSMGDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLP 191
IFI Q+ R +Q+ + + +++F+ G+ L+AT++ GLDI V +I +D
Sbjct: 463 IFIGQSAV--RKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDAS 520
Query: 192 SDVEEYVHRIGRTGR 236
+ + R+GRTGR
Sbjct: 521 ASPIRMLQRMGRTGR 535
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 41.9 bits (94), Expect = 9e-05
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +3
Query: 69 EREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNL 248
ER+ +++G I+VAT G+D VR VI+ P +E Y GR GR G
Sbjct: 781 ERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKP 840
Query: 249 GVATSFFN 272
F++
Sbjct: 841 AHCIMFYS 848
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 34.7 bits (76), Expect = 0.014
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 51 GDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHV 164
G+ N ERE ++ FR + P+LV V G DIP++
Sbjct: 297 GETNDSERETLIQDFRKKKFPVLVNCMVLTEGTDIPNI 334
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 31.9 bits (69), Expect = 0.096
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +3
Query: 114 ILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSF 266
+ VA RGL +P + H+ + Y H GR G MG G +F
Sbjct: 474 VFVANPSEIRGLHLPSITHIFHLWSTFSGVAYQHIAGRLGAMGQTGKIFNF 524
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 29.1 bits (62), Expect = 0.68
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 60 NQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFD-LPSDVEEYVHRIGRTGR 236
N+R R+ FR GQ +++AT + G+++P V D L + + GR GR
Sbjct: 1233 NRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVVFLGDSLQLNALNFHQAAGRAGR 1292
Query: 237 MG 242
G
Sbjct: 1293 RG 1294
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/64 (25%), Positives = 25/64 (39%)
Frame = +3
Query: 66 REREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGN 245
+ER G+ ++AT G+DI + VI P + + GR GR
Sbjct: 597 QERRKIESEMFNGKLYGIIATNALELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGRRNK 656
Query: 246 LGVA 257
+A
Sbjct: 657 SSLA 660
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 96 RTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEY 209
++ TP+++ VA + L+I V H N DL ++E+Y
Sbjct: 1436 KSENTPLILNFMVAIQHLNIQAVNHAYN-DLLIEMEDY 1472
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +3
Query: 75 EDALRRFRT---GQTPILVATAVAARGLDIPHVRHVIN 179
ED ++ F + G +VAT VA + IP++R+V++
Sbjct: 714 EDQMKVFDSSPEGHRMCIVATNVAETSITIPNIRYVVD 751
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,385
Number of Sequences: 5004
Number of extensions: 36717
Number of successful extensions: 162
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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