Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0686
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    28   1.4  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   4.3  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    26   5.6  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   5.6  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   7.5  

>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 462 VHDFVLLILSLWYNCTILNF-LL*LPMF*TKQNNRFIIAKL*GN 334
           VH+FV+L+ +  + C IL F LL +P++  +Q   F    + GN
Sbjct: 473 VHEFVMLLATGKFRCYILTFQLLQIPLYDLQQMFAFKKRDILGN 516


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 434 HYGTIAQSLTFYYNYQCFELNKIIASLLLNYKATFKPRHGAHFMFL 297
           HY  ++Q+L  Y   +CF++ K   SL  N        H    +F+
Sbjct: 767 HYDHLSQALHEYEREKCFDVRKPYESLFQNQDVQQFYMHSLRSLFV 812


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 121 LPKIPISNIILGYSYVTSQILSSSN 47
           LP  P S  ++G+S  TSQ+  +SN
Sbjct: 97  LPSHPRSQSVMGFSSSTSQLTGTSN 121


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -1

Query: 470 KIPFTILFYLYYHYGTIAQSLTFYYNYQCFE--LNKIIASLLLNYKATFK 327
           ++ F I F L   +  I  S  FYY Y  F     ++I S+  N K  FK
Sbjct: 487 RVAFNIPFLLICIFFYIQSSPPFYYGYALFPTIFLQLIHSIFPNTKLGFK 536


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 450 VLLILSLWYNCTILNFLL*LPMF-*TKQNNRFIIAKL 343
           VL++ +L  NC+ LN ++ LPM   TK   R +I +L
Sbjct: 57  VLMLSNLQLNCSFLNAVVSLPMINFTKGTLRRLILRL 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,177
Number of Sequences: 5004
Number of extensions: 54236
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)