Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0686
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    25   0.65 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   0.86 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   3.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.0  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 318 RRAFYVPK*YGV*GNFSQKRRQIGDDF*YETL 223
           R  F + K Y +   +  +RR + DD  +ETL
Sbjct: 11  REMFAIKKSYSIENGYPARRRSLVDDARFETL 42


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = -1

Query: 248 GMISDTKHYSLR*CFKHIFVMSYNVSLVIHTIRLPTSRPRVTTS*NPHQ*HYSRLFLRN 72
           G+ S+   + ++  F  I+ +  N SLV  T   PT+ P  TTS    Q H  ++F+ N
Sbjct: 353 GIRSEQTIFDVKPEFGSIYFLG-NYSLVPTTTASPTTEPSTTTSTTISQKHI-KVFVVN 409


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 213 PQTVVFRIRNHP 248
           PQT+VF +  HP
Sbjct: 170 PQTIVFHLETHP 181


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 362 RLFCLVQNIGNYNRK 406
           R F LV+N+ NYN K
Sbjct: 60  RTFNLVENLDNYNDK 74


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 362 RLFCLVQNIGNYNRK 406
           R F LV+N+ NYN K
Sbjct: 60  RTFNLVENLDNYNDK 74


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 377 LNKIIASLLLNYKATFKPRHG 315
           +  ++ +LL+NY+    P HG
Sbjct: 37  ITMVLENLLMNYENNQLPTHG 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,966
Number of Sequences: 438
Number of extensions: 3982
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)