Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0686
         (668 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21300.1 68417.m03077 pentatricopeptide (PPR) repeat-containi...    29   3.7  
At5g56400.1 68418.m07040 F-box family protein contains F-box dom...    27   8.5  

>At4g21300.1 68417.m03077 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 857

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/74 (22%), Positives = 34/74 (45%)
 Frame = -1

Query: 506 KLVYS*FYRTKTKIPFTILFYLYYHYGTIAQSLTFYYNYQCFELNKIIASLLLNYKATFK 327
           K+ Y    R  +  P+  +   +   G + Q+L FY+   CF ++  +++     KA   
Sbjct: 91  KMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVA 150

Query: 326 PRHGAHFMFLNNTV 285
            ++     FL++TV
Sbjct: 151 LKNFKGIDFLSDTV 164


>At5g56400.1 68418.m07040 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 455

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -1

Query: 347 NYKATFKPRHGAHFMFLNNTVCKG--ISPK 264
           NYKATF+ R  A ++  N+T  K   ISPK
Sbjct: 394 NYKATFRERDVAVYILKNSTCLKKTVISPK 423


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,424,231
Number of Sequences: 28952
Number of extensions: 253626
Number of successful extensions: 474
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)