Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0685
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0610 - 25449085-25453284                                         28   6.2  
01_06_1192 - 35302863-35303984,35305596-35306024                       28   6.2  
06_03_0449 + 20907491-20910146,20910313-20910782                       28   8.3  
03_02_0096 - 5600815-5601348                                           28   8.3  
02_02_0442 - 10318576-10319109                                         28   8.3  

>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -1

Query: 464 YSPPDGKWLPSPMDFSNARSRAKPLPTAQHSPQASLEEGHVIAFGKH--RGGELIPKPEA 291
           YSPP      +P        ++ P PTA HSP   + EGH  +  K     GE  P PE+
Sbjct: 539 YSPP-----ATPESSPPPEGKSPPTPTASHSP-PPVPEGHTPSPPKSGPPAGESPPTPES 592


>01_06_1192 - 35302863-35303984,35305596-35306024
          Length = 516

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 326 VSRTL*HVLLQARLVESVGQ*AAAWLCSWHC 418
           VSR L  +L+    ++ +G  A  WLC+++C
Sbjct: 440 VSRVLTRILIGFGTLDVIGLCALTWLCAYYC 470


>06_03_0449 + 20907491-20910146,20910313-20910782
          Length = 1041

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 273 NTSKNNSFRLWNELPSTVFPERYDMSFFKRGLWRVLGSRQRLGSAPG 413
           N+   +S RL  E+P T+    YD SF    L    GS   L + PG
Sbjct: 584 NSLNVSSNRLTGEVPLTLQGAAYDRSFLGNSLCARPGSGTNLPTCPG 630


>03_02_0096 - 5600815-5601348
          Length = 177

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -1

Query: 410 RSRAKPLPTAQHSPQ---ASLEEGHVIAFGKHRGGELIPKPE 294
           R R +P P    SP+   A++ E    A  +H+GG   P+PE
Sbjct: 106 RRRRRPSPPPPLSPEPSTAAVAEPPAAAHRRHQGGRWRPRPE 147


>02_02_0442 - 10318576-10319109
          Length = 177

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -1

Query: 410 RSRAKPLPTAQHSPQ---ASLEEGHVIAFGKHRGGELIPKPE 294
           R R +P P    SP+   A++ E    A  +H+GG   P+PE
Sbjct: 106 RRRRRPSPPPSLSPEPSTAAVGEPPAAAHRRHQGGRWRPRPE 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,874,520
Number of Sequences: 37544
Number of extensions: 365625
Number of successful extensions: 992
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)