Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0685
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46989| Best HMM Match : Pox_A32 (HMM E-Value=0.023)                 29   4.8  
SB_9232| Best HMM Match : Coq4 (HMM E-Value=1.8)                       28   6.4  
SB_14096| Best HMM Match : DUF595 (HMM E-Value=2.1)                    28   8.4  

>SB_46989| Best HMM Match : Pox_A32 (HMM E-Value=0.023)
          Length = 719

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 449 GKWLPSPMDFSNA-RSRAKPLPTAQHSPQASLEEGHVIAFGKHRGGE 312
           G++L  P++   A + RA P      +P   LEE    AFGKH   E
Sbjct: 100 GRYLMLPLEIIPAVKQRALPERNEAWAPYRLLEEERQFAFGKHSMAE 146


>SB_9232| Best HMM Match : Coq4 (HMM E-Value=1.8)
          Length = 1392

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 523  DLYKIQLSFFFLLPL*ADERTAHLMV--SGYRRPWTSAMPGAEPSRCLLPNTLHK 365
            DL+  ++   F + L   +R A  MV   G  RP++ A+    P   L+  +LHK
Sbjct: 981  DLFLNKIPKRFTMGLVTVDRVAETMVRVKGETRPYSEALTSTPPGYALMYRSLHK 1035


>SB_14096| Best HMM Match : DUF595 (HMM E-Value=2.1)
          Length = 233

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 322 RCFPNAMTCPSSSEACGECWAV 387
           RCF N MT    S  CG  W++
Sbjct: 172 RCFVNLMTWEEKSNDCGHLWSM 193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,544,649
Number of Sequences: 59808
Number of extensions: 408758
Number of successful extensions: 900
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)