Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0685
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = -2

Query: 568  IYMSDLHRSVRQFVHDLYKIQLSFFFLLPL*ADERTAHLMVSGYRRPWTSAMPGAE 401
            IYM+D    +  F+  +YK  +S  + +P      + ++ V G+ +  T A+ G +
Sbjct: 1030 IYMTDKLDQIMLFIVSMYKSAVSHRYYVPDCTSATSYYMPVDGWTQSLTLAVTGTD 1085


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = -2

Query: 568  IYMSDLHRSVRQFVHDLYKIQLSFFFLLPL*ADERTAHLMVSGYRRPWTSAMPGAE 401
            IYM+D    +  F+  +YK  +S  + +P      + ++ V G+ +  T A+ G +
Sbjct: 1030 IYMTDKLDQIMLFIVSMYKSAVSHRYYVPDCTSATSYYMPVDGWTQSLTLAVTGTD 1085


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = -2

Query: 568  IYMSDLHRSVRQFVHDLYKIQLSFFFLLPL*ADERTAHLMVSGYRRPWTSAMPGAE 401
            IYM+D    +  F+  +YK  +S  + +P      + ++ V G+ +  T A+ G +
Sbjct: 1030 IYMTDKLDQIMLFIVSMYKSAVSHRYYVPDCTSATSYYMPVDGWTQSLTLAVTGTD 1085


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,640,319
Number of Sequences: 27780
Number of extensions: 323648
Number of successful extensions: 855
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)