Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0685
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35930.1 68417.m05111 expressed protein                             28   6.9  
At4g13010.1 68417.m02030 oxidoreductase, zinc-binding dehydrogen...    27   9.1  
At1g50910.1 68414.m05724 expressed protein                             27   9.1  
At1g19350.5 68414.m02408 brassinosteroid signalling positive reg...    27   9.1  
At1g19350.4 68414.m02407 brassinosteroid signalling positive reg...    27   9.1  
At1g19350.3 68414.m02405 brassinosteroid signalling positive reg...    27   9.1  
At1g19350.1 68414.m02406 brassinosteroid signalling positive reg...    27   9.1  

>At4g35930.1 68417.m05111 expressed protein 
          Length = 321

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 400 PSRCLLPNTLHKPRLKKDMS 341
           PSRC++P+ L +P L K M+
Sbjct: 279 PSRCIVPSVLQRPTLFKPMA 298


>At4g13010.1 68417.m02030 oxidoreductase, zinc-binding dehydrogenase
           family protein low similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430];
           contains Pfam profile PF00107: oxidoreductase,
           zinc-binding dehydrogenase family
          Length = 329

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +1

Query: 304 GMSSP--PRCFPNAMTCPSSSEACGECWAVGSGXXXXXXXXKSMGDGNHLPSGGL 462
           GM  P  PR FP    C  +++  GE   VGSG        K +   +HL  GGL
Sbjct: 55  GMIRPFLPRKFP----CIPATDVAGEVVEVGSGVKNFKAGDKVVAVLSHLGGGGL 105


>At1g50910.1 68414.m05724 expressed protein
          Length = 552

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 439 YRRPWTSAMPGAEPSRCLLPNTLHKPRLKK 350
           +R    + +P   PS  + PNT+ +P LKK
Sbjct: 495 FRATKVAFLPVKRPSSAITPNTIEQPPLKK 524


>At1g19350.5 68414.m02408 brassinosteroid signalling positive
           regulator, putative similar to BZR1 protein [Arabidopsis
           thaliana] gi|20270971|gb|AAM18490
          Length = 335

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = -1

Query: 437 PSPMDFSNARSRAKPLPTAQHSPQASLEEGHVIAFGKHRGGELIPKPEAI 288
           P P D + + SRA P  +   SP +S  +  ++++         P P  +
Sbjct: 92  PLPGDMAGSSSRATPYSSHNQSPLSSTFDSPILSYQVSPSSSSFPSPSRV 141


>At1g19350.4 68414.m02407 brassinosteroid signalling positive
           regulator, putative similar to BZR1 protein [Arabidopsis
           thaliana] gi|20270971|gb|AAM18490
          Length = 335

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = -1

Query: 437 PSPMDFSNARSRAKPLPTAQHSPQASLEEGHVIAFGKHRGGELIPKPEAI 288
           P P D + + SRA P  +   SP +S  +  ++++         P P  +
Sbjct: 92  PLPGDMAGSSSRATPYSSHNQSPLSSTFDSPILSYQVSPSSSSFPSPSRV 141


>At1g19350.3 68414.m02405 brassinosteroid signalling positive
           regulator, putative similar to BZR1 protein [Arabidopsis
           thaliana] gi|20270971|gb|AAM18490
          Length = 357

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = -1

Query: 437 PSPMDFSNARSRAKPLPTAQHSPQASLEEGHVIAFGKHRGGELIPKPEAI 288
           P P D + + SRA P  +   SP +S  +  ++++         P P  +
Sbjct: 114 PLPGDMAGSSSRATPYSSHNQSPLSSTFDSPILSYQVSPSSSSFPSPSRV 163


>At1g19350.1 68414.m02406 brassinosteroid signalling positive
           regulator, putative similar to BZR1 protein [Arabidopsis
           thaliana] gi|20270971|gb|AAM18490
          Length = 335

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = -1

Query: 437 PSPMDFSNARSRAKPLPTAQHSPQASLEEGHVIAFGKHRGGELIPKPEAI 288
           P P D + + SRA P  +   SP +S  +  ++++         P P  +
Sbjct: 92  PLPGDMAGSSSRATPYSSHNQSPLSSTFDSPILSYQVSPSSSSFPSPSRV 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,483,167
Number of Sequences: 28952
Number of extensions: 291593
Number of successful extensions: 694
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)