Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0681
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.022
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   6.0  

>SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +2

Query: 194 SGKTRKLLSKSEATAI*LTD*ILYQSRTNPSGT*TGKPMRL*EKDPKPSSKDRT-ILSIE 370
           SGK R LL     +A  +   +L+Q  T  +G  + KP R+   D KPS+  RT +L   
Sbjct: 346 SGKNRILLCTKTNSAADIHVELLHQYLTEENGIRSAKPFRIYGSDRKPSTCSRTGLLYSN 405

Query: 371 INKGK 385
           +N GK
Sbjct: 406 LNSGK 410


>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1918

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 178 LLSNRFGEDEEAPIEVRGDGNLINRLNSL 264
           +L N FG  EE  +E + +  +I R+N L
Sbjct: 343 VLDNSFGSQEEIVVEAKKEAEVIKRVNEL 371


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,995,317
Number of Sequences: 59808
Number of extensions: 393381
Number of successful extensions: 810
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)