Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0681
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13710.1 68414.m01611 cytochrome P450 family protein similar ...    32   0.40 
At4g29100.1 68417.m04165 ethylene-responsive family protein cont...    29   3.7  
At5g60910.1 68418.m07641 agamous-like MADS box protein AGL8 / FR...    28   4.9  
At3g54750.2 68416.m06058 expressed protein                             28   4.9  
At3g54750.1 68416.m06057 expressed protein                             28   4.9  
At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger) fa...    28   4.9  
At5g13550.1 68418.m01565 sulfate transporter family protein simi...    27   8.6  

>At1g13710.1 68414.m01611 cytochrome P450 family protein similar to
           cytochrome P450 78A1 (SP:P48420) GI:349717 from [Zea
           mays]
          Length = 517

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
 Frame = +1

Query: 175 DLLSNRFGEDEEAPIEVRGDGNLINRLNSLPIE-------NQPFWYLNWKAYEALRKRPQ 333
           ++++  FGE  +   EV G G  + RL S   E       +  FW+L W  ++ +RKR +
Sbjct: 200 NVMTTVFGESYDFD-EVNGKGCFLERLVSEGYELLGIFNWSDHFWFLRWFDFQGVRKRCR 258

Query: 334 TFQQRPNNFI 363
                 N F+
Sbjct: 259 ALVSEVNTFV 268


>At4g29100.1 68417.m04165 ethylene-responsive family protein
           contains similarity to ethylene-inducible ER33 protein
           [Lycopersicon esculentum] gi|5669656|gb|AAD46413
          Length = 407

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = -3

Query: 239 LPSPRTSIGASSSSPNLFDSKSVST 165
           LPSP TS  +SSSSP+L ++ ++S+
Sbjct: 67  LPSPATSSSSSSSSPSLPNNPNLSS 91


>At5g60910.1 68418.m07641 agamous-like MADS box protein AGL8 /
           FRUITFULL (AGL8) NAP1-1, Nicotiana tabacum,
           EMBL:AF009126; identical to SP:Q38876 Agamous-like MADS
           box protein AGL8 (Floral homeotic protein AGL8)
           (FRUITFULL){Arabidopsis thaliana} PMID:9502732,
           PMID:10648231; identical to cDNA agamous-like 8 (AGL8)
           GI:1004364
          Length = 242

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/66 (24%), Positives = 34/66 (51%)
 Frame = +1

Query: 298 WKAYEALRKRPQTFQQRPNNFIDRN**RQKKNTSIENHETVATNSSTVLDVRISIIFFRN 477
           +++  AL+K+ +  Q   N+ + +   R+KK    E      +NSS+VL  +  +   R+
Sbjct: 148 FESISALQKKDKALQDHNNSLLKKIKEREKKTGQQEGQLVQCSNSSSVLLPQYCVTSSRD 207

Query: 478 GKLDLI 495
           G ++ +
Sbjct: 208 GFVERV 213


>At3g54750.2 68416.m06058 expressed protein 
          Length = 589

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 623 QYGTAFMPTNTIRLIKFSVPFMSAMLSSMVQ*CCQII*T 507
           +Y   F+PT  + ++   VPF +A LSS    C +++ T
Sbjct: 442 RYSFEFLPTADVPVLSSPVPFQNAALSSPEIKCSEMVKT 480


>At3g54750.1 68416.m06057 expressed protein 
          Length = 589

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 623 QYGTAFMPTNTIRLIKFSVPFMSAMLSSMVQ*CCQII*T 507
           +Y   F+PT  + ++   VPF +A LSS    C +++ T
Sbjct: 442 RYSFEFLPTADVPVLSSPVPFQNAALSSPEIKCSEMVKT 480


>At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 finger protein RHX1a
           [Arabidopsis thaliana] GI:3790591; contains Pfam profile
           PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 423

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +1

Query: 385 KKNTSIENHETVATNSSTVLDVRISIIFFRNGKLD-LIRFV 504
           K NTS+ N  +  T +  ++ + +SIIFF +G L  L++F+
Sbjct: 27  KSNTSLSNLNSKITPNILLIIIILSIIFFISGLLHILVKFL 67


>At5g13550.1 68418.m01565 sulfate transporter family protein similar
           to sulfate transporter [Arabidopsis thaliana]
           GI:3777483; contains Pfam profiles PF00916: Sulfate
           transporter family, PF01740: STAS domain
          Length = 685

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/68 (26%), Positives = 35/68 (51%)
 Frame = +1

Query: 145 SPIGYPAVETDLLSNRFGEDEEAPIEVRGDGNLINRLNSLPIENQPFWYLNWKAYEALRK 324
           SPI +  +    + +R  E E A  +    G  ++R+N + +E  P  +++  A EAL++
Sbjct: 535 SPIYFANIS--YIKDRLREYEVAVDKYTNRGLEVDRINFVILEMSPVTHIDSSAVEALKE 592

Query: 325 RPQTFQQR 348
             Q ++ R
Sbjct: 593 LYQEYKTR 600


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,255,786
Number of Sequences: 28952
Number of extensions: 292014
Number of successful extensions: 711
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)