Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0680
         (746 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    25   0.85 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   6.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   6.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   6.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   6.0  
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    21   7.9  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 407 IIYFNILYDLETFFYCLVK-IVYTQRSFVSIVSI 309
           ++Y  ILY LE+  Y + K +V T   F+  + I
Sbjct: 268 VVYVLILYILESLLYMVTKLVVVTFLKFIKKIQI 301



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 535 VYYIIFSILYSLVKCVLVM*YSIKLKSGFSGLEIFK 642
           + YI+ S+LY + K V+V       K    G+ I K
Sbjct: 273 ILYILESLLYMVTKLVVVTFLKFIKKIQIFGIMITK 308


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 318 CKHSSGTKPSFKHSLGVFLS 259
           C   S  KP+F H L VF +
Sbjct: 154 CFFKSSKKPAFSHFLIVFFT 173


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 318 CKHSSGTKPSFKHSLGVFLS 259
           C   S  KP+F H L VF +
Sbjct: 154 CFFKSSKKPAFSHFLIVFFT 173


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 318 CKHSSGTKPSFKHSLGVFLS 259
           C   S  KP+F H L VF +
Sbjct: 154 CFFKSSKKPAFSHFLIVFFT 173


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 318 CKHSSGTKPSFKHSLGVFLS 259
           C   S  KP+F H L VF +
Sbjct: 154 CFFKSSKKPAFSHFLIVFFT 173


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 406 ILNNFIKCLVHE 441
           +L N+IKCL+ E
Sbjct: 41  VLTNYIKCLMDE 52


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,946
Number of Sequences: 336
Number of extensions: 3400
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)