Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0680
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.16 |||mitochondrial inner membrane protein involved in ...    45   1e-05
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   3.8  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.7  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   8.7  

>SPBC16A3.16 |||mitochondrial inner membrane protein involved in
           cytochrome c oxidase assembly Pet191
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 85

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 20/40 (50%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = +2

Query: 263 KKTPRECLKD-GLVPEECLQLRQSFFECKRSLLDNRRRFR 379
           KK+ RECLK+   +PEEC  L +++ ECKR +LD  +R+R
Sbjct: 26  KKSARECLKNKDELPEECKNLIEAYGECKRQMLDMTKRYR 65


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 431 KHLIKLFKIIYFNILYDLETFFYCLVKIVYTQRSFVSIVSIL 306
           ++LIK FK   F  + D+    Y  + I+Y  RSF   +S+L
Sbjct: 100 EYLIKEFKKDVFLKISDVFVCVYSNLNILYISRSFPDQISLL 141


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 109 NMTLNLHVYRHMATDLLSLSHQEQN 35
           N  L +HVY+H+  DL   S  ++N
Sbjct: 128 NHKLEIHVYKHILPDLPQSSEVDRN 152


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 357 SKDRLHSKKLCLNCKHSSGTKPSFKHSLGVFLSLGLTFLM 238
           S+   + ++L ++C  S    PS  H+L + L LG+  LM
Sbjct: 759 SRSPSYRRRLSMSCSVSYSRSPSPLHALFLALLLGIKDLM 798


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,792,874
Number of Sequences: 5004
Number of extensions: 53349
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)