Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0680
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034393-12|CAA22316.1|   96|Caenorhabditis elegans Hypothetical...    52   6e-07
AF016450-6|AAB65982.1|  311|Caenorhabditis elegans Serpentine re...    31   1.1  
Z82268-2|CAD89737.1|  389|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z82268-1|CAB05197.3|  508|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U13019-12|AAC24448.1|  316|Caenorhabditis elegans Serpentine rec...    28   8.1  

>AL034393-12|CAA22316.1|   96|Caenorhabditis elegans Hypothetical
           protein Y18D10A.16 protein.
          Length = 96

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 23/52 (44%), Positives = 32/52 (61%)
 Frame = +2

Query: 236 HIKNVKPKDKKTPRECLKDGLVPEECLQLRQSFFECKRSLLDNRRRFRGHKG 391
           H   V+ +  K   +   DG VP++C  + Q+F +CKRSL+D R RFRG KG
Sbjct: 43  HCVQVQARSAKECIDARGDGSVPDKCFAVLQNFTDCKRSLVDMRSRFRGRKG 94


>AF016450-6|AAB65982.1|  311|Caenorhabditis elegans Serpentine
           receptor, class t protein67 protein.
          Length = 311

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
 Frame = -1

Query: 407 IIYFNILYDLETFFYCLVKIVYTQ-----------RSFVSIVSILQALSHLLNIPLVSF 264
           I+YF I   +   FY ++KI+Y Q            +F+ ++ +LQ + H +  P++ F
Sbjct: 23  ILYFAISIFIPPLFYVIMKIIYKQDKTTPNFTYKLMNFILLLQLLQGICHFITSPILVF 81


>Z82268-2|CAD89737.1|  389|Caenorhabditis elegans Hypothetical
           protein F52B11.1b protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -1

Query: 128 QQSLFNKHDFKSARIPAHGD*STKPISSGAKLTITSCR 15
           Q SLFNK    S+   AHG  +T PISS +  + +S +
Sbjct: 328 QMSLFNKSQSTSSSASAHG--ATTPISSTSSSSSSSSK 363


>Z82268-1|CAB05197.3|  508|Caenorhabditis elegans Hypothetical
           protein F52B11.1a protein.
          Length = 508

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -1

Query: 128 QQSLFNKHDFKSARIPAHGD*STKPISSGAKLTITSCR 15
           Q SLFNK    S+   AHG  +T PISS +  + +S +
Sbjct: 447 QMSLFNKSQSTSSSASAHG--ATTPISSTSSSSSSSSK 482


>U13019-12|AAC24448.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 8 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 720 WNFILPQILLTFYFYGLVVNY 658
           WN I+ + +L FYF G  +NY
Sbjct: 163 WNTIISKKVLIFYFGGFYINY 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,923,858
Number of Sequences: 27780
Number of extensions: 283179
Number of successful extensions: 577
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)