Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0680
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.75 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             24   1.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.3  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   5.3  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    22   7.0  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    22   7.0  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    22   7.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 136  PFCNNHFLINMTLNLHVYRHMATDL 62
            PF + HF+  +  NLHVY  +   L
Sbjct: 985  PFEHRHFISGIDSNLHVYAPLKISL 1009


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 239 IKNVKPKDKKTPRECLKDGLV-PEE 310
           I  V PKDK T  + +K+G+V P+E
Sbjct: 199 IDYVHPKDKATLADQIKNGIVSPQE 223


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 239 IKNVKPKDKKTPRECLKDGLV-PEE 310
           I  V PKDK T  + +K+G+V P+E
Sbjct: 194 IDYVHPKDKATLADQIKNGIVSPQE 218


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 517 VIPFNAVYYIIFSILYSLVKCVLVM*YSIKLKS 615
           V+P    Y I   IL S+  CV V+  ++  +S
Sbjct: 303 VVPLLGKYLIFAMILVSISICVTVVVLNVHFRS 335


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 517 VIPFNAVYYIIFSILYSLVKCVLVM*YSIKLKS 615
           V+P    Y I   IL S+  CV V+  ++  +S
Sbjct: 303 VVPLLGKYLIFAMILVSISICVTVVVLNVHFRS 335


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 106 MTLNLHVYRHMATDLLSLSHQEQN*PLP 23
           M  N+ + RH+A D + +   E+  PLP
Sbjct: 19  MRQNMKLKRHLAQDKVKVRVAEEVDPLP 46


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 406 ILNNFIKCLVHE 441
           +LNN+ KCL+ E
Sbjct: 43  LLNNYFKCLMDE 54


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 406 ILNNFIKCLVHE 441
           +LNN+ KCL+ E
Sbjct: 43  LLNNYFKCLMDE 54


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 406 ILNNFIKCLVHE 441
           +LNN+ KCL+ E
Sbjct: 43  LLNNYFKCLMDE 54


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -3

Query: 345 LHSKKLCLNCKHSSGTKPSFKHSLGVF 265
           LH + +C  CK  + T   ++  L +F
Sbjct: 19  LHGQVICFVCKDITSTSALYRLKLYLF 45


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 317 QLRQSFFECKRSLLDNRRR 373
           ++++ + E  R+ +DNRRR
Sbjct: 499 KIQEIYLEALRAYVDNRRR 517


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,343
Number of Sequences: 438
Number of extensions: 3736
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)