Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0680
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62790.1 68416.m07054 NADH-ubiquinone oxidoreductase-related ...    28   5.7  
At2g47690.1 68415.m05956 NADH-ubiquinone oxidoreductase-related ...    28   5.7  
At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami...    27   10.0 

>At3g62790.1 68416.m07054 NADH-ubiquinone oxidoreductase-related
           contains weak similarity to NADH-ubiquinone
           oxidoreductase 15 kDa subunit (EC 1.6.5.3) (EC 1.6.99.3)
           (Complex I-15 kDa) (CI-15 kDa) (Swiss-Prot:O43920) [Homo
           sapiens]
          Length = 83

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 278 ECLKDGLVPEECLQLRQSFFECKRSLLDNRRRFRGHK 388
           EC+     P++C  LR+ + EC     + +RR R +K
Sbjct: 23  ECMSHCREPKDCTLLREDYLECLHHSKEFQRRNRIYK 59


>At2g47690.1 68415.m05956 NADH-ubiquinone oxidoreductase-related
           contains weak similarity to NADH-ubiquinone
           oxidoreductase 15 kDa subunit (EC 1.6.5.3) (EC 1.6.99.3)
           (Complex I-15 kDa) (CI-15 kDa) (Swiss-Prot:O43920) [Homo
           sapiens
          Length = 118

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 278 ECLKDGLVPEECLQLRQSFFECKRSLLDNRRRFRGHK 388
           EC+     P++C  LR+ + EC     + +RR R +K
Sbjct: 58  ECMSHCREPKDCTLLREDYLECLHHSKEFQRRNRIYK 94


>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
            protein contains Pfam profile PF00383: Cytidine and
            deoxycytidylate deaminase zinc-binding region
          Length = 1307

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 272  PRECLKDGLVPEECLQLRQSFFECKRSLLD 361
            P+  ++ G++  EC Q  Q FF+ +R   D
Sbjct: 1246 PKMTIRRGVLESECAQTMQQFFQLRRKKKD 1275


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,680,658
Number of Sequences: 28952
Number of extensions: 246866
Number of successful extensions: 396
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)