Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0677
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|ch...    81   1e-16
SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr 2|...    81   1e-16
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces...    46   4e-06
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    42   6e-05
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p...    40   3e-04
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    33   0.049
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.79 
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    27   3.2  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   3.2  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    27   3.2  
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    27   3.2  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   4.2  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   7.4  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.4  

>SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 129

 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 32/66 (48%), Positives = 51/66 (77%)
 Frame = +3

Query: 24  EHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHSDDARELLKK 203
           +H     ++I++ + VYD++KFL+ HPGG + L+++AG+D +  FEDVGHS+DA+ELL+K
Sbjct: 13  KHNTRDDLYIVVKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPFEDVGHSEDAQELLEK 72

Query: 204 YKIGTL 221
           + IG L
Sbjct: 73  FYIGNL 78


>SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 36/75 (48%), Positives = 54/75 (72%), Gaps = 2/75 (2%)
 Frame = +3

Query: 24  EHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHSDDARELLKK 203
           EH + K ++++I+  VYDV+ F ++HPGG D +L+ AG+D T+A++D+GHS  A ELL++
Sbjct: 13  EHNNSKDMYMVINGKVYDVSNFADDHPGGLDIMLDYAGQDATKAYQDIGHSIAADELLEE 72

Query: 204 YKIGTLPPG--ERCK 242
             IG L PG  ER K
Sbjct: 73  MYIGDLKPGTEERLK 87


>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 147

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 23/66 (34%), Positives = 34/66 (51%)
 Frame = +3

Query: 24  EHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHSDDARELLKK 203
           +HK ++  WI I   VY+V+ +L  HP G   +L+ AG+D T  F       +   LLK 
Sbjct: 81  KHKTKEDCWIAIRGKVYNVSAYLPYHPAGQKRILDYAGRDATVIFMKFHAWVNEEALLKT 140

Query: 204 YKIGTL 221
             +G L
Sbjct: 141 SFVGFL 146


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = +3

Query: 51  IIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFED--VGHSDDARELLKKYKIGTLP 224
           ++I+  V+D+T F  EHPGG   L    GKD T AF      H++ A  LL  Y++  + 
Sbjct: 376 VLINGVVHDMTGF--EHPGGQGLLRSAFGKDATAAFNGGVYDHTNGAHNLLSTYRVAVVR 433

Query: 225 PGERCKI 245
            G   ++
Sbjct: 434 GGMEVEV 440


>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 145

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +3

Query: 24  EHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHSD--DARELL 197
           +H      W+ I   VY+VT +L  HP G   +L+ +G D T+ +  + H D  +  ELL
Sbjct: 79  KHCSPDDCWMAIRGKVYNVTAYLPYHPVGPKKILKHSGVDATKPY--LKHHDWVNEEELL 136

Query: 198 KKYKIGTL 221
           K   +G L
Sbjct: 137 KTSFVGYL 144


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 32.7 bits (71), Expect = 0.049
 Identities = 22/76 (28%), Positives = 38/76 (50%)
 Frame = -3

Query: 307 PMSKAPASATTAHFNFEQSVMILHLSPGGNVPILYFFNNSRASSLCPTSSKAWVPSFPAT 128
           P+  +P  ++  H  F  + +  H +P G VP  +   N +   + P+ S  +   FP+T
Sbjct: 313 PIPFSPNVSSHPHMAFLPATVPTHSAPPGFVPYDFPITNDK---MYPSPS--FQEEFPST 367

Query: 127 SNNESAPPGCSSKNLV 80
           S + SA PG S+  +V
Sbjct: 368 SKSPSATPGSSNAPVV 383


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 23/75 (30%), Positives = 35/75 (46%)
 Frame = -3

Query: 241 LHLSPGGNVPILYFFNNSRASSLCPTSSKAWVPSFPATSNNESAPPGCSSKNLVTS*TSL 62
           L  S   + P +   ++S  SS  PTS+ +   S  +  ++ S+P   SS  L +S  S 
Sbjct: 178 LSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLST 237

Query: 61  *MIIHTLFSSLCSSS 17
             I  T  SS  +SS
Sbjct: 238 SSIPSTSSSSSSTSS 252


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +3

Query: 84  KFLEEHPGGADSLLEVAGKDGTQAFEDVGHSDDARELLKKYKIGTLPPGERCKIITDCSK 263
           +FL++     +   E    D  +  + +    D  E L+ +K GTL  G    I    SK
Sbjct: 70  EFLDQQANKVEEFFENLVSDARERMDLISDQVDIYEKLRAFKKGTLESGSVVLIQKQHSK 129

Query: 264 LK 269
           L+
Sbjct: 130 LR 131


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 253  SVMILHLSPGGNVPILYFFNNSRASSL--CPTSSKAWVPSFPA 131
            S  +LHL     +P++YF N    + L   P+S+  W   F A
Sbjct: 2219 SSKVLHLPSNELIPMMYFSNPQEIALLLSLPSSNNHWTSPFLA 2261


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = +3

Query: 351 NTFYANPIDLKSDYQDVNEYGTILERFEI----LLCGFRNVLFNM*GRSWVRLGWLGGEV 518
           N  + + ++LK D  D   Y T++    +    L+ G  NV F++    +     L  EV
Sbjct: 697 NWLHPSTLELKPD-DDPLLYKTLMTIRNLYVPELILGLHNVYFSL--EDYDSCFALANEV 753

Query: 519 AAPGLDAYHCVI 554
           A+  L  YHC+I
Sbjct: 754 ASEDLKLYHCLI 765


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 18  EEEHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDG 146
           EEE K      I ++N+VYD+       PG + +LL  AG DG
Sbjct: 78  EEEKKGTNP--IKVNNNVYDIPLQPPVKPGESRTLLIQAGLDG 118


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +1

Query: 475  KGARGSG--LGGWGVRSRHPGWTRTTVLSVLLKIICT*HRVCSRALT 609
            KG  G G  +GG G   + PGW  T   +    ++C     C +ALT
Sbjct: 1537 KGTLGIGAKVGGLG---QMPGWWYTIESNTTAHLLCQFEEACRQALT 1580


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -3

Query: 193 NSRASSLCPTSSKAWVPSF----PATSNNESAPPGCSSKNLVTS*TSL*MIIHTLFSSLC 26
           ++ ASS  P S+     SF    PAT +  S+P   SS  LV + ++L   + T  ++  
Sbjct: 239 STTASSTLPVSTSEATVSFSTDIPATPSTLSSPASSSSSYLVETSSTLTDSVFTTVTATS 298

Query: 25  SSS 17
            SS
Sbjct: 299 DSS 301


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 20/66 (30%), Positives = 37/66 (56%)
 Frame = -3

Query: 202 FFNNSRASSLCPTSSKAWVPSFPATSNNESAPPGCSSKNLVTS*TSL*MIIHTLFSSLCS 23
           F NN+  SS+  + S +   S PA+S++ +A    SS +++ S +S  M+  +  +++ S
Sbjct: 3   FTNNT--SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPS-SSSSMLSSSSATAISS 59

Query: 22  SSCRIP 5
           SS   P
Sbjct: 60  SSSSSP 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,951,428
Number of Sequences: 5004
Number of extensions: 64043
Number of successful extensions: 206
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)