Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0677
         (663 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)                 94   1e-19
SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)                94   1e-19
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)                   64   1e-10
SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19)                58   8e-09
SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20)                49   3e-06
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)              49   4e-06
SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12)                48   5e-06
SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_23567| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00019)         31   0.84 
SB_34637| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_58498| Best HMM Match : Mtc (HMM E-Value=3.00004e-41)               28   5.9  
SB_40332| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         28   5.9  
SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_42304| Best HMM Match : NHL (HMM E-Value=0)                         28   5.9  
SB_18950| Best HMM Match : CTP_transf_3 (HMM E-Value=3.9)              28   7.8  

>SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)
          Length = 109

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 40/72 (55%), Positives = 52/72 (72%)
 Frame = +3

Query: 21  EEHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHSDDARELLK 200
           + H      W++IHN V+DVTKFL+EHPGG + LLE AG D +++FEDVGHS DAREL+ 
Sbjct: 16  KNHNKAGGCWLVIHNKVFDVTKFLDEHPGGEEVLLEQAGGDASESFEDVGHSSDARELMN 75

Query: 201 KYKIGTLPPGER 236
           +Y IG L   +R
Sbjct: 76  EYCIGELREADR 87


>SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)
          Length = 172

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 40/72 (55%), Positives = 52/72 (72%)
 Frame = +3

Query: 21  EEHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHSDDARELLK 200
           + H      W++IHN V+DVTKFL+EHPGG + LLE AG D +++FEDVGHS DAREL+ 
Sbjct: 16  KNHNKAGGCWLVIHNKVFDVTKFLDEHPGGEEVLLEQAGGDASESFEDVGHSSDARELMN 75

Query: 201 KYKIGTLPPGER 236
           +Y IG L   +R
Sbjct: 76  EYCIGELREADR 87


>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
          Length = 1790

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 27/66 (40%), Positives = 41/66 (62%)
 Frame = +3

Query: 21   EEHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHSDDARELLK 200
            E H  E  +W++IH  VYD+ +F EE P G   L + A  D T+AFE+  HS +AR +++
Sbjct: 1237 ENHNKEGGMWVVIHGKVYDLKEFKEEAPCGESLLQKYAACDATKAFEEANHSYEARMMMQ 1296

Query: 201  KYKIGT 218
             + +GT
Sbjct: 1297 DHLVGT 1302


>SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19)
          Length = 167

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 32/74 (43%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
 Frame = +3

Query: 27  HKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAF---EDVGHSDDARELL 197
           HK +  +W+I    VYD++KF E HPGG D LL  +G+D T      E   HS  A   L
Sbjct: 18  HKSDGDLWVIHSGKVYDISKFSERHPGGKDVLLLNSGQDVTSIMSNGEIHKHSQIAYGWL 77

Query: 198 KKYKIGTLPPGERC 239
           KKY IG L     C
Sbjct: 78  KKYNIGRLQAELSC 91


>SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20)
          Length = 142

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 24/81 (29%), Positives = 44/81 (54%)
 Frame = +3

Query: 21  EEHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHSDDARELLK 200
           +EH  +   W+++ + VYD++K++  HPGG   +L +AG++ T  F+    +    + L 
Sbjct: 19  KEHCSKGDCWVVVEDSVYDLSKWIGHHPGGELPILYMAGRECTDVFKAFHPAWVFTKKLP 78

Query: 201 KYKIGTLPPGERCKIITDCSK 263
            +KIG L    + K  T  S+
Sbjct: 79  AFKIGKLDDTRKEKKETSLSE 99


>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
          Length = 672

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
 Frame = +3

Query: 24  EHKDEKS-VWIIIHNDVYDVTKFLEEHPGGADSLLEVAGK--DGTQAFEDVGHSDDAREL 194
           +H + KS +W+     VYD+T F++ HPGG   ++  AG   +   A   V   ++  E+
Sbjct: 211 KHNNRKSRIWVTYKGGVYDITDFIDGHPGGTSKIILAAGAALEPYWAMYAVHKKEEVLEI 270

Query: 195 LKKYKIGTL 221
           L++Y+IG L
Sbjct: 271 LEEYRIGDL 279


>SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12)
          Length = 303

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = +3

Query: 24  EHKDEK-SVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGK--DGTQAFEDVGHSDDAREL 194
           +H D +  VW    + VYD+T F+E+HPGG   ++  AG   D      D    DD  ++
Sbjct: 165 KHTDARHGVWTTYEDGVYDLTDFIEQHPGGKKMIMLAAGSRLDPYWNIHDFHKRDDIVKI 224

Query: 195 LKKYKIGTL 221
           L +++IG+L
Sbjct: 225 LSEFRIGSL 233


>SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 22/42 (52%), Positives = 27/42 (64%)
 Frame = +3

Query: 36  EKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFE 161
           E++  + IH  VYDVT FL  HPGG + LL  AG+D T  FE
Sbjct: 36  EQNAHLAIHGKVYDVTNFLLRHPGGKELLLIGAGRDVTLVFE 77


>SB_23567| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00019)
          Length = 653

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 260 EIEMGSGGAGWSLAHRDRPQEISQLIKL*AEHILRESDR 376
           E ++G+G +G SLA    P+++   ++  AEH  RE+ R
Sbjct: 576 ETDLGTGNSGPSLAVLSNPRDLDVSLEFIAEHSRREAQR 614


>SB_34637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 141 DGTQAFEDVGHSDDARELLKKYKIGTLPPGER 236
           D T+AFE+  HS +AR +++ + +GT    E+
Sbjct: 3   DATKAFEEANHSYEARMMMQDHLVGTFVEPEQ 34


>SB_58498| Best HMM Match : Mtc (HMM E-Value=3.00004e-41)
          Length = 217

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 141 DGTQAFEDVGHSDDARELLKKYKIGTLPPG 230
           D T++F      DDA++L++KY+ G  P G
Sbjct: 29  DWTKSFHTNKELDDAKDLVEKYRRGEEPAG 58


>SB_40332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 141 DGTQAFEDVGHSDDARELLKKYKIGTLPPG 230
           D T++F      DDA++L++KY+ G  P G
Sbjct: 289 DWTKSFHTNKELDDAKDLVEKYRRGEEPAG 318


>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 533 QPGCRDLTPQPPKPDP 486
           QPGC  L P PP P P
Sbjct: 733 QPGCAGLPPPPPPPPP 748


>SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1683

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +1

Query: 91  WRSIQV-ELIHC*KWQGRMEPRLLKTWDIVMMLESC*RNTKLERCLQVKDAKSSQIVRN* 267
           WR   V  L+   KW G  EP LLK   +  M E+    + +E C   +    S   RN 
Sbjct: 90  WRREYVPHLVQRSKWLGPSEPDLLKNIGVARMPET---RSNVENCRAKRKVVRSNCTRNI 146

Query: 268 N 270
           N
Sbjct: 147 N 147


>SB_42304| Best HMM Match : NHL (HMM E-Value=0)
          Length = 1279

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
 Frame = -3

Query: 241 LHLSPGGNVPILYFFNNSRAS-----SLCPTSSKAWVPSFPATSNNESAPPGCSSK 89
           L L+P GN+ I  F NN   S     S+ P + +  +   PA  N    P G   K
Sbjct: 345 LALTPDGNICIADFRNNRYRSNETKLSIVPRAGRKLLQKLPANRNKSYPPTGLKCK 400


>SB_18950| Best HMM Match : CTP_transf_3 (HMM E-Value=3.9)
          Length = 295

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 531 LDAYHCVISFTENHMYVTSSVFTSAHGWQPVDIV 632
           +D++    SFT  H + +   FTS+H   P D V
Sbjct: 244 IDSFTSGHSFTSGHSFTSGHSFTSSHSLTPSDDV 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,374,269
Number of Sequences: 59808
Number of extensions: 494783
Number of successful extensions: 1630
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1623
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)