Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0677
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.37 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.37 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            25   0.64 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   3.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 292  PASATTAHFNFEQSVMILHLSPGGNVPILYF 200
            P +AT    N    V+ LH+ P    PILYF
Sbjct: 1502 PPAATFLSPNSTTLVLRLHVWPDNGCPILYF 1532


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 292  PASATTAHFNFEQSVMILHLSPGGNVPILYF 200
            P +AT    N    V+ LH+ P    PILYF
Sbjct: 1498 PPAATFLSPNSTTLVLRLHVWPDNGCPILYF 1528


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 126 EVAGKDGTQAFEDVGHSDDARELLKKYKIGTLPPGERCKIIT 251
           ++A   G   F  V  + D  +L K  K+  LPPG+ C +I+
Sbjct: 412 QIAFSRGCSGF--VAFNGDQYDLKKNLKV-CLPPGQYCDVIS 450


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 245  HHRLFEIEMGSGGAGWSLAHRDRP 316
            H    E+E G+ G    L HRD P
Sbjct: 1082 HSLAVELEHGAAGLRLCLHHRDLP 1105


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 12  RHEEEHKDEKSVWIIIHNDVYDVT 83
           R ++EHK +KS  I+  N   D+T
Sbjct: 68  RKDKEHKKKKSKTILAVNAEADIT 91


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 12  RHEEEHKDEKSVWIIIHNDVYDVT 83
           R ++EHK +KS  I+  N   D+T
Sbjct: 68  RKDKEHKKKKSKTILAVNAEADIT 91


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 219 LPPGERCKIITDCSKLK 269
           LPP +RCK+I +  +++
Sbjct: 464 LPPRKRCKMILESMEIE 480


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -2

Query: 584 CYVHMIFSKTDNTVVRVQPGCRDLTPQPPKPDP 486
           C V +  +  +  +V +  G  D  P+P  P P
Sbjct: 314 CTVFVFMALMEYCLVNIVLGDSDTPPKPAPPPP 346


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 127 SNNESAPPGCSSKN 86
           S   ++ PGCSSKN
Sbjct: 886 SYKPASTPGCSSKN 899


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,478
Number of Sequences: 438
Number of extensions: 4502
Number of successful extensions: 36
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)