Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0676
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         28   1.6  
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    27   2.8  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    26   6.4  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    26   6.4  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      25   8.4  

>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 159 YIPRTPSLRPSVRRWTDCS 215
           Y  R PSL+P + RW +CS
Sbjct: 356 YHSRKPSLKPFISRWFNCS 374


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = -3

Query: 583 SIICEIHL-KFIFLEI-FYTNTLYSEKSIKLY*EISLC 476
           S+ C+  L  F+F+ I ++T  LY++ S+  +  +SLC
Sbjct: 56  SLCCDFPLFNFLFIAIPYFTEILYNDSSLLWFLFVSLC 93


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = -1

Query: 555 LYSLKYFTQIHYILRNQ*NYIERSVYASYKNLQSMLSMFATKHLICI 415
           L+SL  F  IH I  +  NYIE  VY S +    ML  F++  L+ I
Sbjct: 96  LWSLHSFEDIHEIFISLGNYIE-GVYDSEEEAPHML--FSSSSLLSI 139


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -2

Query: 494 LRDQFMLAIKIYKVCFLCLQQNI*FA*SNSALCICRVSDTTPNN 363
           L +QF+L+ ++   C+L +QQ    A  N++ C   +  ++P N
Sbjct: 464 LFEQFVLSRRVMGPCWLKIQQPNFDAVKNASWCRVEIGCSSPQN 507


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 86  ENPP*ILTRDVITLYFCKLRSSPRVHTSNAESEAVRP 196
           ++PP  LT D I   +   + +P VHT N  +  + P
Sbjct: 117 KSPPPSLTSDWIVDSYASDQDNPSVHTHNRTTPPIPP 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,429
Number of Sequences: 5004
Number of extensions: 55587
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)