Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0676
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0052 - 40767252-40767347,40767455-40767562,40767689-407678...    31   1.2  
01_07_0051 - 40759529-40759624,40759728-40759835,40759972-407601...    30   1.6  
04_04_1185 - 31562061-31562519,31562962-31563026,31563384-31563420     29   5.0  
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42...    29   5.0  
11_04_0455 + 17903921-17904046,17904149-17904214,17905028-179051...    28   6.6  

>01_07_0052 -
           40767252-40767347,40767455-40767562,40767689-40767855,
           40767930-40768056,40768138-40768299,40768467-40768630,
           40768722-40768815,40768892-40769016,40769110-40769255,
           40769361-40769449,40769564-40769608,40770165-40770230,
           40770332-40770457
          Length = 504

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/54 (38%), Positives = 28/54 (51%)
 Frame = -1

Query: 252 RTTRTTSLIKTESSNPSIVGRTASDSAFEVCTRGDDRSLQKYKVITSRVRIYGG 91
           RTT+T+  +   S N   +G  A+D   E CT     SL+KY   T  VR+ GG
Sbjct: 110 RTTKTSKCLNLGSYN--YLGFAAAD---EYCTPRVIESLKKYSASTCSVRVDGG 158


>01_07_0051 -
           40759529-40759624,40759728-40759835,40759972-40760138,
           40760670-40760796,40760885-40761046,40761235-40761398,
           40761561-40761654,40761736-40761860,40762304-40762449,
           40762796-40762884,40763453-40763518,40763824-40763973
          Length = 497

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/54 (38%), Positives = 28/54 (51%)
 Frame = -1

Query: 252 RTTRTTSLIKTESSNPSIVGRTASDSAFEVCTRGDDRSLQKYKVITSRVRIYGG 91
           RTT+T+  +   S N   +G  A+D   E CT     SL+KY   T  VR+ GG
Sbjct: 103 RTTKTSRCLNLGSYN--YLGFAAAD---EYCTPRVIESLKKYSASTCSVRVDGG 151


>04_04_1185 - 31562061-31562519,31562962-31563026,31563384-31563420
          Length = 186

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 631 IHSKTYLTQKLPGNETSIICEIHLKFIFL 545
           +H KT+L +  PG E S  C ++L+F  L
Sbjct: 1   MHLKTHLIRSNPGWEDSTYCHVYLEFSVL 29


>03_01_0049 +
           418957-419040,419599-419796,419918-420040,420172-420209,
           420334-420502,421115-424273,424367-424485,424915-425116
          Length = 1363

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 258 GERTTRTTSLIKTESSNPSI-VGRTASDSAFEVCTRGDD 145
           G+ T   T+L   +SSN  + VGR  S S++   +RGDD
Sbjct: 220 GDSTADRTNLSPRDSSNGGMHVGRQDSASSYVSASRGDD 258


>11_04_0455 +
           17903921-17904046,17904149-17904214,17905028-17905116,
           17905513-17905658,17905743-17905867,17905964-17906057,
           17906144-17906307,17906449-17906610,17906683-17906809,
           17906854-17906862,17906912-17907078,17907113-17907307,
           17907398-17907490
          Length = 520

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -1

Query: 255 ERTTRTTSLIKTESSNPSIVGRTASDSAFEVCTRGDDRSLQKYKVITSRVRIYGG 91
           +RT+ TT  +   S N   +G  A+D   E CT     SL+KY   T  VR+ GG
Sbjct: 94  KRTSNTTRCLNLGSYN--YLGFAAAD---EYCTPLVIESLKKYSPSTCSVRVDGG 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,199,925
Number of Sequences: 37544
Number of extensions: 327867
Number of successful extensions: 741
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)