Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0676
         (732 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_31114| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_56738| Best HMM Match : Extensin_2 (HMM E-Value=0.076)              28   6.8  
SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)          28   6.8  
SB_54525| Best HMM Match : Ery_res_leader1 (HMM E-Value=5.4)           28   6.8  
SB_31322| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  

>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4275

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = -3

Query: 313  PSVVANCDRYG*KRNYLIGRTDNTDDVTNKNGIEQSVHRRTDG--LRLGVRGMYTRRRSE 140
            P +  +  R   KRN L  +    +D+   N    S H   +G   R  +R     RRSE
Sbjct: 1655 PGIKMDVTRSRQKRNKLANQLKPYNDIFGCNLRPDSDHVSFNGTLFRFPLRTKEQARRSE 1714

Query: 139  LTKVQSDHIAGQNLRRIFVS 80
            +  +Q DH     L ++FVS
Sbjct: 1715 IKNLQYDHGEVVKLLQMFVS 1734


>SB_31114| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -3

Query: 652 NYPLDKRIHSKT--YLTQKLPGNETSIICEIHLKFIFLEIFYTNTLYSEKSI 503
           NYP  K+ H +T  Y+ +KL G     + E +L+ + +E FY+   + + ++
Sbjct: 12  NYP--KKSHHRTGGYIREKLQGYIREFVYECNLQTVTIENFYSECKFQKVTL 61


>SB_56738| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
          Length = 869

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = -1

Query: 240 TTSLIKTESSNPSIVGRTASDSAFEVCTRGDDRSLQKYKVITSRVRIYGGFSFPA 76
           TTS  K   ++ +   +T++ +A E+ +R    SLQ+ + ++S  +   G S+PA
Sbjct: 593 TTSQAKPSIASVTNTSKTSASTAVELASRPKRESLQESRAVSSGFQSRSG-SYPA 646


>SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)
          Length = 592

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 581 RCFISRQFLC*ICFAVYSFIQRIVVMYLHNVPCNL 685
           RC +   F C    A+YS +Q + V+ L+++  NL
Sbjct: 538 RCALVTSFACFKYMALYSIVQFVSVLILYSIGSNL 572


>SB_54525| Best HMM Match : Ery_res_leader1 (HMM E-Value=5.4)
          Length = 157

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 581 RCFISRQFLC*ICFAVYSFIQRIVVMYLHNVPCNL 685
           RC +   F C    A+YS +Q + V+ L+++  NL
Sbjct: 85  RCALVTSFACFKYMAMYSIVQFVSVLILYSIHSNL 119


>SB_31322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 646 PLDKRIHSKTYLTQKLPGNETSIICEIHLKF 554
           PL+K   SKTY   + P NETSI  +  ++F
Sbjct: 238 PLEKISRSKTYAPPEQPFNETSIHRQDFMRF 268


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,875,269
Number of Sequences: 59808
Number of extensions: 412872
Number of successful extensions: 988
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)