Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0676
         (732 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30575.1 68415.m03725 glycosyl transferase family 8 protein c...    30   1.4  
At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zin...    29   4.2  
At3g25040.1 68416.m03129 ER lumen protein retaining receptor, pu...    28   5.6  
At1g05520.1 68414.m00565 transport protein, putative similar to ...    28   5.6  
At5g37650.1 68418.m04534 hypothetical protein contains Pfam PF04...    27   9.7  
At3g45280.1 68416.m04889 syntaxin 72 (SYP72) identical to syntax...    27   9.7  
At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein ...    27   9.7  

>At2g30575.1 68415.m03725 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 610

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 640 DKRIHSKTYLTQKLPGNETSIICEIHLKFIFLE 542
           DK I +K YL   LPGN + I+ E+ ++   LE
Sbjct: 180 DKIIQAKAYLNLALPGNNSQIVKELRVRTKELE 212


>At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zinc
           finger (C2H2 type) protein TT1 identical to transparent
           testa 1 GI:18253279 from [Arabidopsis thaliana];
           contains Pfam profile PF00096: Zinc finger, C2H2 type
          Length = 303

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = -3

Query: 463 FTKYAFYVCNKTFNLHSRIQLYVY 392
           FT ++ +VC KTFN ++ +Q++++
Sbjct: 142 FTHFSCHVCFKTFNRYNNLQMHMW 165


>At3g25040.1 68416.m03129 ER lumen protein retaining receptor,
           putative / HDEL receptor, putative similar to SP|P35402
           ER lumen protein retaining receptor (HDEL receptor)
           {Arabidopsis thaliana}; contains Pfam profile PF00810:
           ER lumen protein retaining receptor
          Length = 215

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 568 IHLKFIFLEIFYTNTLYSE 512
           IH KF FLE+ +T++LY E
Sbjct: 111 IHEKFTFLEVLWTSSLYLE 129


>At1g05520.1 68414.m00565 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 783

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 587 FISRQFLC*ICFAVYSFIQRIVVMYLHNVPCNLMSRHS 700
           F+++ ++C ICF    F     VM   NVPC L  +++
Sbjct: 74  FLAKIWICPICFQRNHFPPHYHVMSETNVPCELYPQYT 111


>At5g37650.1 68418.m04534 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577)); common family
           comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
          Length = 607

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = -3

Query: 190 DGLRLGVRGMYTRRRSELTKVQSDHIAGQNLRRIFVSRRPGRLKLYQVR*VVSGS 26
           DGL + V  +YTR++SE      D+   + L  +FVS  P  L L  ++  +S S
Sbjct: 13  DGLTMIVDNLYTRKQSE------DYKTARTLYDLFVSNFPNCLTLKLLKIYLSSS 61


>At3g45280.1 68416.m04889 syntaxin 72 (SYP72) identical to syntaxin
           of plants 72 (SYP72) (GI:13811650)[Arabidopsis
           thaliana]; identified as SYP72 in Sanderfoot, A.A., et
           al, Plant Physiology 124:1558-69(2000); syntaxin 8 -
           Homo sapiens, EMBL:AF115323
          Length = 267

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 546 RNINFRCISQIIDVSFPGSFCVRYVLLCIRL 638
           +N N R   Q++ +    +FC+  +LLC+ L
Sbjct: 226 KNTNVRLKKQLVQMRSSRNFCIDIILLCVIL 256


>At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein
           contains Pfam domian PF00096: Zinc finger, C2H2 type
          Length = 302

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -3

Query: 460 TKYAFYVCNKTFNLHSRIQLYVY 392
           T+++  VCNKTFN  + +Q++++
Sbjct: 99  TQFSCSVCNKTFNRFNNMQMHMW 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,183,296
Number of Sequences: 28952
Number of extensions: 272669
Number of successful extensions: 616
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)