Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0673
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    75   1e-14
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    32   0.075
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    28   1.6  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    27   2.8  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    27   3.7  
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi...    25   8.6  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    25   8.6  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    25   8.6  

>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 46/146 (31%), Positives = 82/146 (56%)
 Frame = +1

Query: 301 LALMMLVTGSINSLSTKWADILKSKGSDGEERYFNHPFLQTLSMFLGEMLCLLVFKLVYY 480
           L ++ML +G  N++ +K+ D +    ++  E   +   LQ+L++FLGE  CL  + L   
Sbjct: 3   LPIIMLTSGVANTVLSKYQDSI----AEESEPIKSMAVLQSLNIFLGEA-CLWFYVLYKR 57

Query: 481 KTRNTGGHSLTAGTQNFNPLILMPAAMLDLIGTSIMYIGLTLTYISSFQMFRGSIIVFVA 660
            ++  G  SL          + +PA M D+ G+++M +GL  T  S +QM RGS+I+FVA
Sbjct: 58  HSQGPGYESLDHLPLKHKVFMALPAIM-DICGSTLMNVGLLYTSASIYQMTRGSLIIFVA 116

Query: 661 VLSMTFSNKQIIKREWLGIVCVIIGL 738
           + + T   + I + +WL +  V++G+
Sbjct: 117 LFATTLLKRTIGQLQWLSLSFVVLGV 142


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 32.3 bits (70), Expect = 0.075
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 210 KITVNLKLEETLILLVTFIKQDGLDKLPEVPRPDDV 317
           K+ +NLK+  T +L +T I   GL K+P   +P D+
Sbjct: 151 KLPINLKIYSTRVLNLTLIDLPGLTKIPVGDQPTDI 186


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +1

Query: 310 MMLVTGSINSLSTKWADILKSKGSDGEERYFNHPFLQTLSMFLGEMLCLLVFKLVYY 480
           ++L   + N +  K  DIL         R++ H FL  L  F G  + ++  +L YY
Sbjct: 110 ILLPVNATNGVGEKGFDILSFSNVKNHNRFYAHVFLSWL--FFGFTIFIIYRELRYY 164


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 171 NRIKKCDNLTYDYKITVNLKLEETLILLVT 260
           N+I++  +L YD K+  ++ LEE  +  V+
Sbjct: 21  NKIRRAPSLLYDPKVAADMDLEEIYVTAVS 50


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
 Frame = +1

Query: 289 YQKFLALMMLV---TGSINSLSTKWADILKSKGSDGEERYFN---HPFLQTLS 429
           Y K L LM+ V   T  +NS + ++ + L+S+GS+    Y N    P L++L+
Sbjct: 622 YGKVLDLMLKVKDQTNLVNSAALEFFEFLRSEGSEDTLDYLNKNYRPQLESLN 674


>SPBC18E5.05c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 607 TYISSFQMFRGSIIVFVAVLSMTFSNKQI 693
           T ISSF MF GS++   ++  +T  +K +
Sbjct: 106 TSISSFTMFFGSVLALGSICFLTSFHKDV 134


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 355 ADILKSKGSDGEERYFNHPFLQTLSMFLGEMLC 453
           +++L SK  D   +YF    L  L +F+  +LC
Sbjct: 25  SNVLDSKEGDTRRKYFTKTHLHRLFVFVVLLLC 57


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 301 LALMMLVTGSINSLSTKWAD 360
           +A +++  G +NSLST+W D
Sbjct: 193 MAAVIVFHGLVNSLSTRWLD 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,215,399
Number of Sequences: 5004
Number of extensions: 69820
Number of successful extensions: 210
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)