Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0673
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26965| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.98 
SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             30   2.3  
SB_3015| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_48887| Best HMM Match : PA28_alpha (HMM E-Value=6.2)                29   5.2  
SB_57640| Best HMM Match : DUF632 (HMM E-Value=2.8)                    28   6.9  
SB_45941| Best HMM Match : DUF632 (HMM E-Value=2.8)                    28   6.9  
SB_57110| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-22)                 28   9.1  

>SB_26965| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 827

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = -1

Query: 722 HTIPSHSLLMICLLENVMDSTATKTMIDPRNIWKLLM*VRVKPIYIMDVPIKSNIAAGIR 543
           HT+P+H    +   + V  S   KT + P+ I +LL  +   P +   +     +   +R
Sbjct: 658 HTVPAHKTFRVVYNKRVRRSMKKKTTMTPKTIDRLLRLIYYDPNHPAALGGVDKLVRAVR 717

Query: 542 IKGLK 528
            KG++
Sbjct: 718 SKGVR 722


>SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1752

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 377 GQTVKKDISTIHSCRPYLCF-WVKCYVYLCSNWCITKHGT 493
           G T +K  S I  C+    F  ++C+   C  WC+ + GT
Sbjct: 822 GSTPRKRTSFIPQCKQDGTFDSIQCHALSCECWCVDRRGT 861


>SB_3015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 468 IGVLQNTEHWGTFINSWNTKLQSLNSDARSYVGFDWNIHNVYWFDSNLHQQFPNV 632
           +GV   T H  T+I+  +  ++S+ +  R      W  H VY  D++LH+    V
Sbjct: 8   VGVSVETTHSKTWIHPCHAPVKSITNRPR----LPWRRHKVYETDAHLHKPLSGV 58


>SB_48887| Best HMM Match : PA28_alpha (HMM E-Value=6.2)
          Length = 159

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = -1

Query: 602 VKPIYIMDVPIKSNIAAGIRI-----KGLKFCVPAVNECPPVFR 486
           + P+Y    PI +N++ GIR+       L+FC  +V E   V R
Sbjct: 58  LSPVYFRRPPISNNVSEGIRVTTHHLAALRFCGCSVTEPATVLR 101


>SB_57640| Best HMM Match : DUF632 (HMM E-Value=2.8)
          Length = 560

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 468 IGVLQNTEHWGTFINSWNTKLQSL 539
           + VL +  HW   I  WNT LQ+L
Sbjct: 287 LDVLSSLTHWEEVIAEWNTTLQTL 310


>SB_45941| Best HMM Match : DUF632 (HMM E-Value=2.8)
          Length = 688

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 468 IGVLQNTEHWGTFINSWNTKLQSL 539
           + VL +  HW   I  WNT LQ+L
Sbjct: 331 LDVLSSLTHWEEVIAEWNTTLQTL 354


>SB_57110| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-22)
          Length = 559

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -1

Query: 407 WLKYLSSPSDPFDFNISAHFVLKELIEPVTNIIR 306
           WL Y+SS + P+ + +    + KEL++ +  ++R
Sbjct: 446 WLMYMSSLTTPYVYTLLNRRLRKELVQAIKAMVR 479


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,961,414
Number of Sequences: 59808
Number of extensions: 487453
Number of successful extensions: 1095
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)