Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0673
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   1.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   7.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 474 VLQNTEHWGTFINSWNTKLQ 533
           V+  TE W +FIN W  KL+
Sbjct: 385 VVLETE-WSSFINPWTKKLE 403



 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -3

Query: 738 KSDDDAHNPEPFSFDDLFVGECHGQHSHKDNDRPTE 631
           +S   + NP     D + +GE    H + D+   TE
Sbjct: 502 RSFSGSRNPLLQEHDSVMLGEISPHHEYYDSKSSTE 537


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 474 VLQNTEHWGTFINSWNTKLQ 533
           V+  TE W +FIN W  KL+
Sbjct: 91  VVLETE-WSSFINPWTKKLE 109


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 446 ISPKNIDKVCKNGWL 402
           +SP   D +C NGW+
Sbjct: 365 LSPSIHDNICSNGWI 379


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 240 TLILLVTFIKQDGLDKLPEVPRP 308
           T +L +TF+  +    LP+VP P
Sbjct: 251 TTVLTMTFLGLEARTDLPKVPYP 273


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -1

Query: 725 THTIPSHSLLMICLLENVMDSTATKTMI 642
           T+ IP+ +++++ L    +DS +T+ MI
Sbjct: 258 TYVIPAVTMMLLTLTVLWLDSRSTERMI 285


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 495 WGTFINSWNTK 527
           WG+  N WNTK
Sbjct: 98  WGSCNNYWNTK 108


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +2

Query: 629 CSVGLSLSLWLC 664
           CS+ L++ +W+C
Sbjct: 138 CSIWLAVDVWMC 149


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 449 YVYLCSNWCITKHGTLGDIH 508
           Y YL  +  +T  G L D+H
Sbjct: 28  YTYLVRSRTLTSLGDLSDVH 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,379
Number of Sequences: 438
Number of extensions: 4640
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)