Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0673
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49110.1 68418.m06079 expressed protein  ; expression support...    29   3.2  
At5g35604.1 68418.m04242 hypothetical protein                          28   5.7  
At1g06890.1 68414.m00732 transporter-related low similarity to S...    28   5.7  
At2g22330.1 68415.m02649 cytochrome P450, putative similar to cy...    28   7.5  

>At5g49110.1 68418.m06079 expressed protein  ; expression supported by
            MPSS
          Length = 1487

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +1

Query: 115  TIIFDCVLQILCDI 156
            TIIF+C +QILCDI
Sbjct: 1048 TIIFNCTVQILCDI 1061


>At5g35604.1 68418.m04242 hypothetical protein
          Length = 298

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 495 WGTFINSWNTKLQSLNSDARSY 560
           W   INSW  K  SL +D RS+
Sbjct: 216 WEQEINSWRNKFSSLEADHRSF 237


>At1g06890.1 68414.m00732 transporter-related low similarity to
           SP|Q9NTN3 UDP-glucuronic acid/UDP-N-acetylgalactosamine
           transporter {Homo sapiens}, SP|Q95YI5 UDP-sugar
           transporter UST74c {Drosophila melanogaster}, SP|Q18779
           UDP-sugar transporter sqv-7 {Caenorhabditis elegans};
           contains 8 predicted transmembrane domains
          Length = 357

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/70 (20%), Positives = 34/70 (48%)
 Frame = +1

Query: 529 FNPLILMPAAMLDLIGTSIMYIGLTLTYISSFQMFRGSIIVFVAVLSMTFSNKQIIKREW 708
           F+P  +M   +L+ I   ++ + L    +  +QM + +II    +L   F  K+  ++  
Sbjct: 70  FDPRAVMGFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFFRKKFSRKIQ 129

Query: 709 LGIVCVIIGL 738
             +  +++G+
Sbjct: 130 FSLTILLLGV 139


>At2g22330.1 68415.m02649 cytochrome P450, putative similar to
           cytochrome P450 79B2 (SP:O81346) [Arabidopsis thaliana]
          Length = 543

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 23/78 (29%), Positives = 38/78 (48%)
 Frame = +1

Query: 331 INSLSTKWADILKSKGSDGEERYFNHPFLQTLSMFLGEMLCLLVFKLVYYKTRNTGGHSL 510
           +++L++  +D L +K S G   + N   L TL   L  +  L++   +   +RN   H L
Sbjct: 1   MDTLASNSSD-LTTKSSLGMSSFTNMYLLTTLQA-LAALCFLMILNKIKSSSRNKKLHPL 58

Query: 511 TAGTQNFNPLILMPAAML 564
             G   F P++ M  AML
Sbjct: 59  PPGPTGF-PIVGMIPAML 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,274,152
Number of Sequences: 28952
Number of extensions: 342818
Number of successful extensions: 832
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)