Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0672
(605 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g13950.1 68414.m01639 eukaryotic translation initiation facto... 201 3e-52
At1g69410.1 68414.m07972 eukaryotic translation initiation facto... 194 4e-50
At1g26630.1 68414.m03243 eukaryotic translation initiation facto... 190 8e-49
At5g14230.1 68418.m01663 ankyrin repeat family protein contains ... 29 2.4
At5g03140.1 68418.m00262 lectin protein kinase family protein co... 29 3.2
At3g05830.1 68416.m00654 expressed protein 29 3.2
At5g64290.1 68418.m08076 oxoglutarate/malate translocator, putat... 28 4.2
At5g64280.1 68418.m08075 oxoglutarate/malate translocator, putat... 28 4.2
At3g51290.1 68416.m05614 proline-rich family protein 28 4.2
At1g35830.1 68414.m04452 VQ motif-containing protein contains PF... 28 4.2
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 28 5.5
At3g06490.1 68416.m00753 myb family transcription factor (MYB108... 28 5.5
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 27 7.3
At5g01830.1 68418.m00102 armadillo/beta-catenin repeat family pr... 27 7.3
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila... 27 7.3
At2g28550.1 68415.m03468 AP2 domain-containing transcription fac... 27 7.3
At1g56345.1 68414.m06477 pseudouridine synthase family protein l... 27 7.3
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 27 7.3
At3g58930.1 68416.m06567 F-box family protein contains F-box dom... 27 9.6
At2g27680.1 68415.m03354 aldo/keto reductase family protein cont... 27 9.6
>At1g13950.1 68414.m01639 eukaryotic translation initiation factor
5A-1 / eIF-5A 1 identical to SP|Q9XI91 Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Arabidopsis thaliana}
Length = 158
Score = 201 bits (490), Expect = 3e-52
Identities = 87/150 (58%), Positives = 117/150 (78%), Gaps = 1/150 (0%)
Frame = +3
Query: 78 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 257
E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4 EEHHFESSDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63
Query: 258 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD-LG 434
IF KK EDI PS+HN DVPHV R DYQL DIS+DGY++L+ DNG ++DLK+P+ D L
Sbjct: 64 IFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLL 123
Query: 435 TQLRTDFDSGKELLCTVLKSCGEECVIAVK 524
Q+++ FD GK+L+ +V+ + GEE + A+K
Sbjct: 124 QQIKSGFDDGKDLVVSVMSAMGEEQINALK 153
>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similarity to
eukaryotic initiation factor 5A (2) (Nicotiana
plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Lycopersicon esculentum}
Length = 158
Score = 194 bits (473), Expect = 4e-50
Identities = 85/150 (56%), Positives = 115/150 (76%), Gaps = 1/150 (0%)
Frame = +3
Query: 78 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 257
++ HFE+ D+GAS T+P Q +RK G +++KGRPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4 DEHHFESSDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAID 63
Query: 258 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLG 434
IF KK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ DNG ++DLK+P D L
Sbjct: 64 IFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALL 123
Query: 435 TQLRTDFDSGKELLCTVLKSCGEECVIAVK 524
TQL+ F+ GK+++ +V+ + GEE + A+K
Sbjct: 124 TQLKNGFEEGKDIVVSVMSAMGEEQMCALK 153
>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similariy to
SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
(eIF-5A 1) {Lycopersicon esculentum}
Length = 159
Score = 190 bits (462), Expect = 8e-49
Identities = 83/150 (55%), Positives = 111/150 (74%), Gaps = 1/150 (0%)
Frame = +3
Query: 78 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 257
++ HFE +SGAS T+P +RK G +++K RPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4 DEHHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63
Query: 258 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLG 434
IF KK EDI PS+HN DVPHV R DYQL DI++DG+++L+ D+G ++DLK+P D L
Sbjct: 64 IFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLT 123
Query: 435 TQLRTDFDSGKELLCTVLKSCGEECVIAVK 524
Q+R FD GK+++ +V+ S GEE + AVK
Sbjct: 124 AQMRLGFDEGKDIVVSVMSSMGEEQICAVK 153
>At5g14230.1 68418.m01663 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 591
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +3
Query: 408 LKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEEC 509
L IPDGD T L G +C L SCG C
Sbjct: 412 LDIPDGDGYTPLMLAAREGHGHMCEYLISCGANC 445
>At5g03140.1 68418.m00262 lectin protein kinase family protein
contains Pfam domains, PF00138: Legume lectins alpha
domain, PF00139: Legume lectins beta domain and PF00069:
Protein kinase domain
Length = 711
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 178 RPFSITKPFLRRAEHCMGKVAEAPESPVSKCVSSMS 71
+P +T+P +R + A+ PE P++K SSMS
Sbjct: 631 QPDPVTRPTMRSVVQILVGEADVPEVPIAKPSSSMS 666
>At3g05830.1 68416.m00654 expressed protein
Length = 336
Score = 28.7 bits (61), Expect = 3.2
Identities = 24/82 (29%), Positives = 39/82 (47%)
Frame = +3
Query: 231 AKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDL 410
AK + G+D K ED+ P V+ +D ++T + D+ + LM +G +
Sbjct: 186 AKAGIGGMDSELQKLLEDVSPMKFERMNRLVEVKDEEITKLKDE--IRLM--SGQWKHKT 241
Query: 411 KIPDGDLGTQLRTDFDSGKELL 476
K + L Q RTD D K++L
Sbjct: 242 KELESQLEKQRRTDQDLKKKVL 263
>At5g64290.1 68418.m08076 oxoglutarate/malate translocator, putative
similar to SWISS-PROT:Q41364 2-oxoglutarate/malate
translocator, chloroplast precursor. [Spinach]{Spinacia
oleracea}
Length = 563
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/71 (22%), Positives = 28/71 (39%)
Frame = +1
Query: 106 PGPQPPSPCNVRPCVKMVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLISSMVKSMKI 285
P P PSP K++ L + +L+ P PE + L + S + + +
Sbjct: 80 PPPPSPSPSPSPQGAKLIPLILSISVGLILRFAVPVPEGVTPQGWQLLSIFLSTIAGLVL 139
Query: 286 SVPPHTTWTYL 318
S P W ++
Sbjct: 140 SPLPVGAWAFI 150
>At5g64280.1 68418.m08075 oxoglutarate/malate translocator, putative
similar to SWISS-PROT:Q41364 2-oxoglutarate/malate
translocator, chloroplast precursor [Spinach]{Spinacia
oleracea}
Length = 549
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/75 (20%), Positives = 31/75 (41%)
Frame = +1
Query: 94 RPETPGPQPPSPCNVRPCVKMVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLISSMVK 273
+P+ P P PP P K++ L V +++ P+PE + + L + +
Sbjct: 66 KPQPPPPSPPQPQG----AKLIPLAISVSIGLIVRFLIPRPEQVTSQGWQLLSIFLFTIS 121
Query: 274 SMKISVPPHTTWTYL 318
+ + P W ++
Sbjct: 122 GLVLGPLPVGAWAFI 136
>At3g51290.1 68416.m05614 proline-rich family protein
Length = 602
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 55 KTQQWVTSKTHTLRPETPGPQPPSP 129
+T W T+ T ++ P P P PP P
Sbjct: 91 ETTTWTTTTTSSVLPPPPPPPPPPP 115
>At1g35830.1 68414.m04452 VQ motif-containing protein contains
PF05678: VQ motif
Length = 302
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 25 SHSFLTVVKFKTQQWVTSKTHTLRPETPGPQPPSP 129
S ++L V + ++TH L P+ P P PP P
Sbjct: 58 SATYLNFVNNLISDDILNQTHLLPPQPPPPPPPPP 92
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 536 SCVCFDGDDALLTAGFQHGA 477
+C+ F GDD+LL +G Q G+
Sbjct: 124 TCLVFSGDDSLLVSGSQDGS 143
>At3g06490.1 68416.m00753 myb family transcription factor (MYB108)
identical to transcription factor MYB108 GI:15375290
from [Arabidopsis thaliana]
Length = 323
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 181 HARLLKCPHPKPESTATLKFTWLGLISSMVKSMKIS--VPPHTTWTYLT*SAKTTN 342
HA+ LKC + T+K+ W+ + ++S S TT T T SA T++
Sbjct: 122 HAKQLKCDVNSQQFKDTMKYLWMPRLVERIQSASASSAAAATTTTTTTTGSAGTSS 177
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 321 VKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDL-GTQLRTDFDSGKE 470
V+R+ +++ Y L ADN + + G + GT+++T+FDS +E
Sbjct: 350 VRRDGSKMSLAQSKKYSQLNADNAQWEDRQLLRSGAVRGTEVQTEFDSEEE 400
>At5g01830.1 68418.m00102 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 674
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 7 AGIARGSHSFLTVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNV 138
AG ARG +++++ ++W TH ET P+P +
Sbjct: 627 AGTARGGRKAASLMRY-LRRWAAGDTHNTAAETQSIVVPTPSRI 669
>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar to
SP|P35207 Antiviral protein SKI2 {Saccharomyces
cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 1347
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Frame = +3
Query: 351 ISDDGYLTLMADNG--DLREDLKIPDGDLGTQLR----TDFDSGKELLCTV 485
+SD+ L + A G D+ +++ D DL Q++ + +SG+EL+CTV
Sbjct: 1141 MSDEALLQMPAFQGRIDVLKNIGCIDDDLVVQIKGRVACEMNSGEELICTV 1191
>At2g28550.1 68415.m03468 AP2 domain-containing transcription factor
RAP2.7 (RAP2.7) nearly identical to AP2 domain
transcription factor RAP2.7 (GI:2281639) [Arabidopsis
thaliana]
Length = 449
Score = 27.5 bits (58), Expect = 7.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 79 KTHTLRPETPGPQPP 123
+T +RP+ PGPQPP
Sbjct: 402 QTSAVRPQPPGPQPP 416
>At1g56345.1 68414.m06477 pseudouridine synthase family protein low
similarity to SP|P23851 Ribosomal large subunit
pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
synthase) (Uracil hydrolyase) {Escherichia coli};
contains Pfam profile PF00849: RNA pseudouridylate
synthase
Length = 322
Score = 27.5 bits (58), Expect = 7.3
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = -1
Query: 488 QHGAQQFLAAVEVSTQLCAEVTIRDFEVLTQ-VTVVSHQGQVAIIRDISQLVVFALHVRY 312
+HGA + AA++V L +RD E + V+V S + + + D++ ++V A R
Sbjct: 176 KHGAWRVYAALDVGRVLPGGSFVRDMETTFEVVSVNSVKNESCELEDVNHVIV-AEGER- 233
Query: 311 VHVVCGGTD 285
+ CGG D
Sbjct: 234 -ELSCGGDD 241
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Frame = +1
Query: 79 KTHTLRPETPGPQPPS---PCNVRPCVKMVSLC*RVVHARLLKCP 204
KT T P PP PCN PC + S + + R CP
Sbjct: 22 KTTTKPTAAAAPSPPDIHCPCNAGPCNTVTSKTEKNPNRRFYTCP 66
>At3g58930.1 68416.m06567 F-box family protein contains F-box domain
Pfam:PF00646
Length = 482
Score = 27.1 bits (57), Expect = 9.6
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Frame = -2
Query: 298 VEGQISSYFLPLK----ISIPTK*TL-AWPCFPVLDVDISTILH-----GRPFSITKPFL 149
V G I S FLP K S+ +K L W P+LD+D S LH I + F+
Sbjct: 11 VRGHILS-FLPAKHIALTSVLSKSWLNLWKLIPILDIDDSEFLHPEEGKAERLEIRQSFV 69
Query: 148 RRAEHCMGKVAEAPESPVS-KCVSSMSP 68
+ + ++P S KC++ + P
Sbjct: 70 DFVDRVLALQDDSPIDRFSLKCITGIHP 97
>At2g27680.1 68415.m03354 aldo/keto reductase family protein
contains Pfam profile PF00248: oxidoreductase, aldo/keto
reductase family
Length = 384
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 279 EDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKI 416
++I S MDV + + D ++DGYL + DL+E+ KI
Sbjct: 147 QNIDISRKRMDVAALDMLQFHWWDYANDGYLDALKHLTDLKEEGKI 192
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,745,266
Number of Sequences: 28952
Number of extensions: 312753
Number of successful extensions: 996
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -