Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0670
         (625 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q37385 Cluster: ATP synthase a chain; n=1; Acanthamoeba...    32   9.7  

>UniRef50_Q37385 Cluster: ATP synthase a chain; n=1; Acanthamoeba
           castellanii|Rep: ATP synthase a chain - Acanthamoeba
           castellanii (Amoeba)
          Length = 247

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -1

Query: 310 GFPFIIIAKTFSGSAESNAW*NAAKNVFYLRKVPFIQNYNNIISLKYYFVCIATYS 143
           GF F+      + +   + W  A +N++      F Q  NNI++LKY+ + +  +S
Sbjct: 39  GFTFLFYVNYSTNTYIPSKWQYAVENIYLFVLQLFKQQINNIVALKYFPLVLFVFS 94


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 542,810,930
Number of Sequences: 1657284
Number of extensions: 9522869
Number of successful extensions: 19535
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 18675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19532
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)