Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0670
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    29   0.72 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    25   6.7  
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    25   6.7  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    25   8.9  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   8.9  

>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -1

Query: 301 FIIIAKTFSGSAESNAW*NAA-KNVFYLRKVPFIQNYNNIISLKYYFVC 158
           FII+ K F+  A S+   N + KN+F+L+ +  + NY  ++  K + VC
Sbjct: 5   FIIMDKRFAVFASSDKPNNCSRKNMFFLKNIIVLSNYLYLL-YKAWIVC 52


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 508 MVRKPGKKNLLLQSILKIAYSYI 576
           M+RK   K L L SIL IA+SY+
Sbjct: 777 MIRKGLIKLLFLVSILSIAFSYL 799


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 293 YSKNVFRLSRIECMVKRSQKCVLPAKSSFHTK 198
           YSK + R   + C VK S     P   SF ++
Sbjct: 20  YSKTMVRSFHVSCAVKNSGNVPTPRNKSFFSR 51


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 232 VFYLRKVPFIQNYNN 188
           ++YLR+ PF+Q +NN
Sbjct: 575 MYYLRRSPFLQVFNN 589


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -2

Query: 156 SPRTQIPQEVSENFHTTMKIYSNVH*VLKQKIYY--SKFYLIRPSCRFLQ 13
           +P  QI QE+S+  H   K+   V+  L+ K  Y   +F+L+RP+ + LQ
Sbjct: 572 NPVLQI-QEISDYCH--FKLLKKVNRNLQIKTNYPTQEFHLLRPTIKILQ 618


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,292
Number of Sequences: 5004
Number of extensions: 46140
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)