Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0670
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46400.1 68418.m05711 expressed protein                             30   1.4  
At2g41570.1 68415.m05137 hypothetical protein similar to zinc fi...    30   1.4  

>At5g46400.1 68418.m05711 expressed protein
          Length = 1036

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -2

Query: 165 SFASPRTQIPQE-VSENFHTTMKIYSN-VH*VLKQKIYYSKFY 43
           SFA P+TQIPQ  V  N+    ++ S+  +  + Q+ YYS +Y
Sbjct: 850 SFAYPQTQIPQNPVQSNYQQEGQMQSHEAYNQMWQQYYYSYYY 892


>At2g41570.1 68415.m05137 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 418

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
 Frame = +2

Query: 449 NERVSLTETGIGT---FSYLVDRW*ENQ-EKKICYCRVF*KLHTVTFNYLTKDTLK 604
           ++ + + +TG+ T   +  +++RW E   E+ + +  V+ +L  +  NY T+DT+K
Sbjct: 85  DDLLEILKTGVWTQDEWCVVMERWIEKSTEEYLMFLPVWMRLRNIPVNYYTQDTIK 140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,807,111
Number of Sequences: 28952
Number of extensions: 212165
Number of successful extensions: 390
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)