Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0669
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|...    27   1.9  
SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    27   1.9  
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb...    26   4.4  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   5.8  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    26   5.8  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    26   5.8  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    25   7.6  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    25   7.6  

>SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 174

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -1

Query: 656 INTDALKRDLYISTFETMFSSSRRRQFRPTTLSISSVHMNLRSRTTRRLNFERV-SIQNG 480
           + T  +  ++ +S       SS  RQF  T  S + V + + S+ T    FER+  +  G
Sbjct: 68  MKTKTIHSEVILSLSPKTEISSAFRQFSMTKKSKNIVVVKIDSKLTEEEEFERLDKLVEG 127

Query: 479 WGIELSRSHLRKTV 438
             +E S   L+K +
Sbjct: 128 NRVEFSDEELQKLI 141


>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 490 IETLSKFSRLVVLDLKFICTDEILNVVGLNCLLLEE 597
           +ET+ KF RL V  L  + TD+ +N  G++ +  EE
Sbjct: 242 LETIVKFIRLNVYRLSCLSTDDFINGKGVHFVPPEE 277


>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 127 KCTFIHYFCDILHIIINNS-IFVLSKT 50
           +C FI YF  +LH+ IN S +F+ + T
Sbjct: 38  QCLFIVYFFYLLHVRINTSPLFIKTTT 64


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 115  IHYFCDILHIIINNSIF-VLSKTYCAHYCV 29
            I Y C I +  + NSIF +LS  Y  + CV
Sbjct: 1288 IFYPCPIAYTYVRNSIFLILSICYTINICV 1317


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 391 RGDPRIQLHVLTHPNMTVFRKCDLDNSIPQPF 486
           RG  R   HV+ HPN T     +L   +P P+
Sbjct: 84  RGSVRYT-HVMAHPNTTTTVSENLPEEVPPPY 114


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 463 DNSIPQPFWIETLSKFSRLVVLDLKFIC 546
           D SIP+PF I+TL K + L V  +   C
Sbjct: 17  DGSIPEPFKIKTLPKDTVLNVTKIPSEC 44


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 415 HVLTHPNMTVFRKCDLDNSIPQPFWIETLSKFSRL 519
           ++L HP  T+      +  +PQPF I  ++K S L
Sbjct: 354 NLLNHPEGTMTNLLPPNMEMPQPFEIPVIAKTSAL 388


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 565 VVGLNCLLLEELNIVSKVDIYKSLFN 642
           V  L+C LL+  N  S  + YK LFN
Sbjct: 54  VRSLDCRLLKHKNEASHKNFYKKLFN 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,587
Number of Sequences: 5004
Number of extensions: 53036
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)