Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0669
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0731 - 6516894-6517473,6517485-6519574                           37   0.013
12_01_0727 + 6446283-6449300                                           33   0.16 
06_02_0270 - 13613853-13614153,13614233-13614403,13614486-136153...    33   0.28 
06_01_0289 - 2111768-2114377,2114970-2115025,2115272-2115323           30   1.5  
12_01_0730 + 6505759-6508806                                           29   3.4  
12_01_0714 + 6223269-6226250                                           29   3.4  

>12_01_0731 - 6516894-6517473,6517485-6519574
          Length = 889

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
 Frame = +1

Query: 421 LTHPNMTVFRKCDLDNSIPQPFWIETLSKFSRLVVLDLKF--ICTDEILNVVGLNCLLLE 594
           LT  N+  F  C L   IP    I  L+K ++L + +  F  +   +ILN+  L  LLL 
Sbjct: 405 LTSLNVLKFFSCGLSGPIPAS--IGNLTKLTKLALYNCHFSGVIAPQILNLTHLQYLLLH 462

Query: 595 ELNIVSKVDI--YKSLFNASVL 654
             N+V  V++  Y  + N S L
Sbjct: 463 SNNLVGTVELSSYSKMQNLSAL 484


>12_01_0727 + 6446283-6449300
          Length = 1005

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
 Frame = +1

Query: 421 LTHPNMTVFRKCDLDNSIPQPFWIETLSKFSRLVVLDLKFI--CTDEILNVVGLNCLLLE 594
           LT   +  F  C L   IP    I  L+K ++L + +  F      +ILN+  L  LLL 
Sbjct: 398 LTSLTILKFFSCGLSGPIPAS--IGNLTKLTKLALYNCHFSGEIPPQILNLTHLQSLLLH 455

Query: 595 ELNIVSKVDI--YKSLFNASVL 654
             N V  V++  Y  + N SVL
Sbjct: 456 SNNFVGTVELASYSKMQNLSVL 477


>06_02_0270 -
           13613853-13614153,13614233-13614403,13614486-13615318,
           13615401-13615746,13615940-13616127,13616238-13616408
          Length = 669

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = -1

Query: 608 TMFSSSRRRQFRPTTLSISSVHMNLRSRTTRRLNFERVSIQNGWGIELSR---SHLRKTV 438
           T   +S RRQ+ P  +      M+L  R    LN E ++   G G++ +R   SHLR  V
Sbjct: 55  TEAGTSARRQYGPKKMQPLQQQMSL-PRFQTSLNKE-LATGCGQGVKSTRTALSHLRTKV 112

Query: 437 MLGCVNTWS*IRGSPRYWQH 378
           ML  +  W    GS   W+H
Sbjct: 113 MLSSIRNWG--IGSDVPWKH 130


>06_01_0289 - 2111768-2114377,2114970-2115025,2115272-2115323
          Length = 905

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +1

Query: 379 CCQYRGDPRIQLHVLTHPNMTVFRKCDLDN---SIPQPFWIETLSKFSRLVVLDL 534
           C  +   P   L+ L+H N T  R  DL +   S   P WI   SK S L  LDL
Sbjct: 226 CLNHAFLPATDLNALSHTNFTAIRVLDLKSNNFSSRMPDWI---SKLSSLAYLDL 277


>12_01_0730 + 6505759-6508806
          Length = 1015

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +1

Query: 433 NMTVFRKCDLDNSIPQPFWIETLSKFSRLVVLDLKFICT--DEILNVVGLNCLLLEELNI 606
           ++TV R  +   S P P  I  L + + L + +  F  T   +ILN+  L  LLL   N 
Sbjct: 411 SLTVLRISNCGLSGPVPSSIGNLRELTTLALYNCNFSGTVPPQILNLTRLQTLLLHSNNF 470

Query: 607 VSKVDI 624
              VD+
Sbjct: 471 AGTVDL 476


>12_01_0714 + 6223269-6226250
          Length = 993

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +1

Query: 433 NMTVFRKCDLDNSIPQPFWIETLSKFSRLVVLDLKFICT--DEILNVVGLNCLLLEELNI 606
           ++TV R  +   S P P  I  L + + L + +  F  T   +ILN+  L  LLL   N 
Sbjct: 389 SLTVLRISNCGLSGPVPSSIGNLRELTTLALYNCNFSGTVHPQILNLTRLQTLLLHSNNF 448

Query: 607 VSKVDI 624
              VD+
Sbjct: 449 AGTVDL 454


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,951,175
Number of Sequences: 37544
Number of extensions: 314262
Number of successful extensions: 815
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)