Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0669
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003145-3|AAB57717.1|  751|Caenorhabditis elegans Cpeb polya bi...    27   9.3  

>AF003145-3|AAB57717.1|  751|Caenorhabditis elegans Cpeb polya
           binding family protein 3 protein.
          Length = 751

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -1

Query: 599 SSSRRRQF---RPTTLSISSVHMNLRSRTTRRLNFER 498
           SS+R   F   R T  SI S   + R ++ RRLNFER
Sbjct: 130 SSNRMHIFGSSRTTKKSIDSERNSQRKKSARRLNFER 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,586,953
Number of Sequences: 27780
Number of extensions: 306424
Number of successful extensions: 810
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)