Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0669
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       27   0.16 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.7  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   3.5  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   3.5  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   4.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   6.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.2  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   6.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.2  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 406 IQLHVLTHPNMTVFRKCDLDNSIPQPFWIETLSKFSRLVV 525
           I  H+ THPN+T + +C   N+ P      T S F  +++
Sbjct: 173 IVFHLETHPNVTWYSQCVTFNAFPTYTHEITYSLFGMIMM 212


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 449 ANAISITQYPNHSGSKLSRNSVVLSFSTSNSYAQTKYST 565
           +N  S +Q    SGS +SRNS   + S S+ Y   + ST
Sbjct: 18  SNTCSNSQSQRSSGSSISRNS---NRSESSGYCGRRPST 53


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 449 ANAISITQYPNHSGSKLSRNSVVLSFSTSNSYAQTKYST 565
           +N  S +Q    SGS +SRNS   + S S+ Y   + ST
Sbjct: 18  SNTCSNSQSQRSSGSSISRNS---NRSESSGYCGRRPST 53


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -2

Query: 637 KEICIYQLSRLCLVPRE 587
           KE+C+ Q +R C++ ++
Sbjct: 34  KEVCVLQANRACILIKD 50


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -2

Query: 637 KEICIYQLSRLCLVPRE 587
           KE+C+ Q +R C++ ++
Sbjct: 17  KEVCVLQANRACILIKD 33


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +1

Query: 442 VFRKCDLDNSIPQPFWIETLSKFSRLVVLDLKFICTDEILNVVGLNCLLLEE 597
           + R+C +DN+  +   + T  KFSR V+  +KF  T  +++    N    EE
Sbjct: 97  IIRQC-VDNAKNEDKCL-TAQKFSRCVIDYVKFHITQYMISNANSNTTSEEE 146


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 297 KKSIFIEMPPDDCFTMQVIRCPLFRTNM 380
           ++   +  PP    TM+V++  LF TN+
Sbjct: 897 QRGTVVSPPPTKRRTMKVVKYHLFLTNL 924


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
            isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 297  KKSIFIEMPPDDCFTMQVIRCPLFRTNM 380
            ++   +  PP    TM+V++  LF TN+
Sbjct: 935  QRGTVVSPPPTKRRTMKVVKYHLFLTNL 962


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 539 NLRSRTTRRLNFERVSIQN 483
           NL   TT  LNF  VSI++
Sbjct: 434 NLPKYTTEELNFPGVSIES 452


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 345 QVIRCPLFRTNMLPVPWRSSYSAPRVD 425
           Q I CP+       V WR +YS  +VD
Sbjct: 242 QTITCPI------KVSWRGNYSCLKVD 262


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 345 QVIRCPLFRTNMLPVPWRSSYSAPRVD 425
           Q I CP+       V WR +YS  +VD
Sbjct: 293 QTITCPI------KVSWRGNYSCLKVD 313


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 345 QVIRCPLFRTNMLPVPWRSSYSAPRVD 425
           Q I CP+       V WR +YS  +VD
Sbjct: 242 QTITCPI------KVSWRGNYSCLKVD 262


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 539 NLRSRTTRRLNFERVSIQN 483
           NL   TT  LNF  VSI++
Sbjct: 434 NLPKYTTEELNFPGVSIES 452


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 539 NLRSRTTRRLNFERVSIQN 483
           NL   TT  LNF  VSI++
Sbjct: 60  NLPKYTTEELNFPGVSIES 78


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 493 RSRMVGVLSYRDRICGRLSCWDASTR 416
           RSRM+     R+ + G  + WD+  R
Sbjct: 250 RSRMLTATVNRNHLSGGTNHWDSGRR 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,249
Number of Sequences: 438
Number of extensions: 4075
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)