Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0669
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34530.2 68415.m04242 expressed protein                             31   0.93 
At4g23840.1 68417.m03428 leucine-rich repeat family protein            29   2.8  
At3g58940.1 68416.m06568 F-box family protein contains F-box dom...    29   2.8  
At1g51820.1 68414.m05841 leucine-rich repeat protein kinase, put...    29   3.7  
At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) fa...    28   4.9  
At3g19330.3 68416.m02453 polyadenylate-binding protein-related /...    28   4.9  
At3g19330.2 68416.m02452 polyadenylate-binding protein-related /...    28   4.9  
At3g19330.1 68416.m02451 polyadenylate-binding protein-related /...    28   4.9  
At2g27430.1 68415.m03315 expressed protein                             28   4.9  
At1g51830.1 68414.m05843 leucine-rich repeat protein kinase, put...    28   4.9  
At5g18880.1 68418.m02243 expressed protein ; expression supporte...    27   8.6  

>At2g34530.2 68415.m04242 expressed protein
          Length = 241

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 354 RCPLFRTNMLPVPWRSSYSAPRVDASQ 434
           R PL++ N  P+P RSSY A R D  Q
Sbjct: 198 RRPLYQANYNPLPSRSSYEASRGDIQQ 224


>At4g23840.1 68417.m03428 leucine-rich repeat family protein
          Length = 597

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +1

Query: 496 TLSKFSRLVVLDLKFICTDEILNVVGLNCLLLEELNIVSKVDIYKSLFNASVLI 657
           ++ KFS L  L+L +    +  N+  L CL +    IVS+   + SL +   L+
Sbjct: 203 SILKFSNLSFLNLSWTSITQTPNIPHLECLHMNTCTIVSEPKTHSSLASLKKLV 256


>At3g58940.1 68416.m06568 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 618

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -3

Query: 645 CIKKRFVYINFRDYV*FLEKETIQAHYVEYFVCAYEFEV---ENDKT 514
           C  K+     FR  +   EKE I+ H++EYF C  E E+   END T
Sbjct: 367 CPVKKLEVRGFRGTI--REKEMIR-HFLEYFPCLDEMEIDAEENDST 410


>At1g51820.1 68414.m05841 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase GI:1321686 from (Arabidopsis thaliana); contains
           leucine rich repeat (LRR) domains, Pfam:PF00560;
           contains protein kinase domain, Pfam:PF00069
          Length = 885

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = -2

Query: 502 REFRSRMVGVLSYRDRICGRLSCWDASTRGAEYEDRHGTGSMFVLNRGHRITCMVKQSSG 323
           R     +VG++ Y D        ++    G   E   GT + F+LN G R+  +++ + G
Sbjct: 628 RVHHKNLVGLVGYCDEGDNLALIYEYMANGDLKEHMSGTRNRFILNWGTRLKIVIESAQG 687


>At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 480

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -1

Query: 656 INTDALKRDLYISTFETMFSSSRRRQFRPTTLSISSVHMNLRSRTTRRLNFERVS 492
           + +D   +DL +  +  M  S ++   +    S+ S     +SRT+ R++  RVS
Sbjct: 68  LRSDCTWQDLKLKIYRAMMESLKKAGPKTVAASVKSSKKKRKSRTSLRVSSSRVS 122


>At3g19330.3 68416.m02453 polyadenylate-binding protein-related /
           PABP-related similar to At14a (GI:11994571 and
           GI:11994573) [Arabidopsis thaliana]; similar to
           Polyadenylate-binding protein 2 (Poly(A)-binding protein
           2) (PABP 2) (Swiss-Prot:P42731) [Arabidopsis thaliana]
          Length = 345

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/51 (39%), Positives = 23/51 (45%)
 Frame = -1

Query: 677 PASDTFLINTDALKRDLYISTFETMFSSSRRRQFRPTTLSISSVHMNLRSR 525
           PA D  L +  A    L + TFE  FSS     FR T L  S +  NL  R
Sbjct: 161 PAIDESLCDL-AFDVFLKLDTFENPFSSPESYSFRDTQLCFSQLKHNLDRR 210


>At3g19330.2 68416.m02452 polyadenylate-binding protein-related /
           PABP-related similar to At14a (GI:11994571 and
           GI:11994573) [Arabidopsis thaliana]; similar to
           Polyadenylate-binding protein 2 (Poly(A)-binding protein
           2) (PABP 2) (Swiss-Prot:P42731) [Arabidopsis thaliana]
          Length = 349

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/51 (39%), Positives = 23/51 (45%)
 Frame = -1

Query: 677 PASDTFLINTDALKRDLYISTFETMFSSSRRRQFRPTTLSISSVHMNLRSR 525
           PA D  L +  A    L + TFE  FSS     FR T L  S +  NL  R
Sbjct: 161 PAIDESLCDL-AFDVFLKLDTFENPFSSPESYSFRDTQLCFSQLKHNLDRR 210


>At3g19330.1 68416.m02451 polyadenylate-binding protein-related /
           PABP-related similar to At14a (GI:11994571 and
           GI:11994573) [Arabidopsis thaliana]; similar to
           Polyadenylate-binding protein 2 (Poly(A)-binding protein
           2) (PABP 2) (Swiss-Prot:P42731) [Arabidopsis thaliana]
          Length = 382

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/51 (39%), Positives = 23/51 (45%)
 Frame = -1

Query: 677 PASDTFLINTDALKRDLYISTFETMFSSSRRRQFRPTTLSISSVHMNLRSR 525
           PA D  L +  A    L + TFE  FSS     FR T L  S +  NL  R
Sbjct: 161 PAIDESLCDL-AFDVFLKLDTFENPFSSPESYSFRDTQLCFSQLKHNLDRR 210


>At2g27430.1 68415.m03315 expressed protein
          Length = 438

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -2

Query: 655 SIQMH*KEICIYQLSRLCLVPREGDNSGPL 566
           S  M  KEIC+  +S LCLV    +N+GPL
Sbjct: 215 STDMKTKEICLATISNLCLVL---ENAGPL 241


>At1g51830.1 68414.m05843 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase GI:1321686 from [Arabidopsis thaliana]
          Length = 675

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = -2

Query: 502 REFRSRMVGVLSYRDRICGRLSCWDASTRGAEYEDRHGTGSMFVLNRGHRITCMVKQSSG 323
           R     +VG++ Y D        ++    G   E   GT + F+LN G R+  +V+ + G
Sbjct: 418 RVHHKNLVGLVGYCDEGENLALIYEYMANGDLKEHMSGTRNHFILNWGTRLKIVVESAQG 477


>At5g18880.1 68418.m02243 expressed protein ; expression supported
           by MPSS
          Length = 295

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 430 PNMTVFRKCDLDNSIPQPFWIETLSKFSRLV 522
           P++  F +CD+ N     FW +  + F +L+
Sbjct: 6   PSIVEFMRCDMGNGESASFWYDAWTDFGQLL 36


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,268,742
Number of Sequences: 28952
Number of extensions: 266905
Number of successful extensions: 730
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)