Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0667
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    49   7e-07
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    46   5e-06
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    41   1e-04
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    39   6e-04
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch...    36   0.007
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    33   0.049
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    31   0.11 
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    31   0.15 
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    31   0.15 
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   7.4  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   9.8  

>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = +3

Query: 3   EHETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNICGKT 140
           E ++   +VC    C K F R+Y L  HM  H+  RPF C+IC K+
Sbjct: 563 ESKSQGNYVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKS 608



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 6   HETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNICGK 137
           H   + F C +  C KSF R +    H ++H+G++ FAC  C +
Sbjct: 594 HTNYRPFQCSI--CKKSFARQHDKRRHEQLHTGIKAFACVTCNQ 635


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 12  TAKK-FVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNICG 134
           +AKK F C  +ECGK + R   L +H++ HS  RPF C+  G
Sbjct: 18  SAKKIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTG 59



 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +3

Query: 6   HETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNICG 134
           H   + FVC    C K+F+R  +L  H + H+ V+PF+C+  G
Sbjct: 47  HSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDG 89



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 6   HETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFAC 122
           H   K F C    C   F+   +L  H++VH   +P+AC
Sbjct: 77  HTNVKPFSCHYDGCDAQFYTQQHLERHIEVHRKPKPYAC 115


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 21  KFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNICGK 137
           +F C   +C KSF R  +L  H + H  V+ F+C+ C +
Sbjct: 25  RFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNR 63


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 9   ETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNIC 131
           E   K+VC    C K   R Y +  H++ H   RP+ C++C
Sbjct: 438 EADGKYVCLYNGCNKRIARKYNVESHIQTHLSDRPYRCDLC 478



 Score = 28.7 bits (61), Expect = 0.80
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 6   HETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFAC 122
           H + + + C +  C   F R + L  H+++H   RP+ C
Sbjct: 467 HLSDRPYRCDL--CKAGFVRHHDLKRHLRIHENGRPYVC 503


>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 6   HETAKKFVCKVQECGKSFHRSYYLSEHMK-VH 98
           H   K F+C V EC +SF RS  L++HM+ VH
Sbjct: 100 HTGEKPFICSVPECDRSFTRSDALAKHMRTVH 131



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +3

Query: 21  KFVCKVQEC---GKSFHRSYYLSEHMKVHSGVRPFACNI 128
           K+ C+  +C   G      + L  H++ H+G +PF C++
Sbjct: 72  KYTCEWDDCPRKGMVQTSRFALVAHLRSHTGEKPFICSV 110


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 32.7 bits (71), Expect = 0.049
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 21  KFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNICGKT 140
           ++ C  Q C KSF R  +   H + H+  + F C  C  +
Sbjct: 16  RYKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSS 55


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 45  CGKSFHRSYYLSEHMKVHSGVRPFACN 125
           C + FHR  +   H++ H+G +PF C+
Sbjct: 9   CKRVFHRQEHQVRHIRSHTGEKPFECS 35



 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 6   HETAKKFVCKVQECGKSFHRSYYLSEHMKVH 98
           H   K F C    C K F R   L  H++ H
Sbjct: 26  HTGEKPFECSYPSCKKRFTRRDELIRHVRTH 56


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 45  CGKSFHRSYYLSEHMKVHSGVRPFACNICG 134
           C K+F+R  + + H++ H+G +P  C   G
Sbjct: 31  CTKAFYRLEHQTRHIRTHTGEKPHVCTFPG 60



 Score = 29.5 bits (63), Expect = 0.46
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 6   HETAKKFVCKVQECGKSFHRSYYLSEHMKVHS 101
           H   K  VC    C K F RS  L+ H ++H+
Sbjct: 48  HTGEKPHVCTFPGCAKRFSRSDELTRHARIHT 79


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 42  ECGKSFHRSYYLSEHMKVHSGVRPFACNI--CGK 137
           EC + F R   L  H   H+G RPF C+   CGK
Sbjct: 472 ECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGK 505



 Score = 28.7 bits (61), Expect = 0.80
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 6   HETAKKFVCKVQECGKSFHRSYYLSEHMKVH 98
           H   + FVC    CGK+F+    +  H ++H
Sbjct: 490 HTGERPFVCDYAGCGKAFNVRSNMRRHQRIH 520


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 216 TTPLWPRAPARGGSLCACC 160
           TTPLW R+P  G  LC  C
Sbjct: 642 TTPLWRRSP-DGQPLCNAC 659


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 597 IDEGADNVNRNNIAYNPFVSFTLGPYLQF 511
           I  G+D +    I Y PF+ FT  P   F
Sbjct: 610 IPPGSDPILNFGIQYQPFIPFTAVPSFPF 638


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,160
Number of Sequences: 5004
Number of extensions: 42710
Number of successful extensions: 106
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)