Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0667
(665 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 40 0.001
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 40 0.001
03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524 37 0.017
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281... 36 0.022
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 36 0.022
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29... 35 0.067
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 34 0.088
02_04_0194 + 20820985-20821027,20822168-20822367,20822477-208225... 33 0.20
01_06_0486 - 29729333-29729356,29729856-29730106,29730364-297304... 31 0.62
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 29 2.5
04_01_0532 - 6938763-6941177 29 4.4
06_03_0743 + 24069752-24070483,24071890-24072345 28 7.7
03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598 28 7.7
>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 6 HETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNI--CGKT 140
H + C + C K+F + +EHM+VH+GVRP+ C CG+T
Sbjct: 1277 HIDERPLKCTWKGCKKAFKWPWARTEHMRVHTGVRPYECQEPGCGQT 1323
Score = 35.9 bits (79), Expect = 0.029
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 18 KKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFAC 122
K+ +C V+ C K F YL +H KVH RP C
Sbjct: 1251 KRDICPVKGCKKKFFCHKYLLQHRKVHIDERPLKC 1285
>01_06_1729 + 39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 18 KKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFAC 122
K +C V+ CGK F YL +H KVH+ RP C
Sbjct: 1107 KSDICPVKGCGKKFFSHKYLLQHRKVHTDDRPLTC 1141
Score = 34.7 bits (76), Expect = 0.067
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 6 HETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACN 125
H + C + C +F + +EH++VH+G RP+ C+
Sbjct: 1133 HTDDRPLTCPWKGCNMAFKWPWARTEHLRVHTGDRPYVCH 1172
>03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524
Length = 651
Score = 36.7 bits (81), Expect = 0.017
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 18 KKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFAC 122
KK C V+ CG+ F YL H +H+ P+ C
Sbjct: 561 KKNTCTVKSCGRHFRSHKYLRRHQSIHNDDMPYKC 595
Score = 35.1 bits (77), Expect = 0.051
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 6 HETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNICG 134
H + C + C +F S+ EH +VH+G RP+ C G
Sbjct: 587 HNDDMPYKCPWEGCSMAFKWSWDRGEHFQVHAGKRPYKCTTPG 629
>03_01_0360 +
2815067-2816033,2816120-2816198,2816275-2816342,
2817382-2817464,2821566-2823083
Length = 904
Score = 36.3 bits (80), Expect = 0.022
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 27 VCKVQECGKSFHRSYYLSEHMKVHSGVRPFAC 122
+C + CGK F YL H VH RPF C
Sbjct: 818 ICTDESCGKRFSSHKYLKRHQCVHRDERPFKC 849
Score = 36.3 bits (80), Expect = 0.022
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 6 HETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNI--CGKT 140
H + F C C +F + +EH++VH+G RP+ C+ CG++
Sbjct: 841 HRDERPFKCPWDGCPMTFKWLWAQTEHIRVHTGERPYKCSAPDCGQS 887
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 36.3 bits (80), Expect = 0.022
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 39 QECGKSFHRSYYLSEHMKVHSGVRPFAC 122
QECG SF + +L +HM+ HS R F C
Sbjct: 63 QECGASFQKPAHLKQHMQSHSDERSFIC 90
Score = 35.9 bits (79), Expect = 0.029
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 6 HETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNI--CGK 137
H + F+C +++C S+ R +L+ HM H G + F C++ CG+
Sbjct: 82 HSDERSFICPLEDCPFSYIRKDHLNRHMLKHQG-KLFTCSMDGCGR 126
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 3 EHETAKKFVCKVQECGKSFHRSYYLSEHMKV-HSGVRPFACNICG 134
E + ++ C + C SF L++H+K H V+PFAC G
Sbjct: 237 EVPSTERIKCSFEGCECSFSNKSNLTKHIKASHDQVKPFACRFTG 281
>05_01_0042 -
290077-290676,291093-291233,291675-291764,292364-292563,
292685-292743,292827-292942
Length = 401
Score = 34.7 bits (76), Expect = 0.067
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 18 KKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNI--CGK 137
++++C+ CGK F S L H +H+G + F C CGK
Sbjct: 114 RQYICQEPGCGKKFVDSSKLKRHHLIHTGQKDFICPHPGCGK 155
Score = 34.3 bits (75), Expect = 0.088
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +3
Query: 6 HETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNI--CGK 137
H K F+C CGK+F + L H+K H+ C CGK
Sbjct: 140 HTGQKDFICPHPGCGKAFSLDFNLRSHLKTHALENYHVCPFPACGK 185
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 3 EHETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNI--CGK 137
E T F+C + CGK+F L +H VH+ R + C CGK
Sbjct: 80 EPTTEILFLCSYENCGKTFVDVAALRKHAHVHN-ERQYICQEPGCGK 125
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 18 KKFVCKVQECGKSFHRSYYLSEHMK 92
+ +VC CGK++ SY L+ H+K
Sbjct: 259 RPYVCPYDGCGKAYIHSYKLNLHLK 283
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 34.3 bits (75), Expect = 0.088
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 30 CKVQECGKSFHRSYYLSEHMK-VHSGVRPFACNI--CGKT 140
C +++C SF + L +H+K VH RPF C CGK+
Sbjct: 445 CHLKDCKLSFSKKSNLDKHVKAVHEQKRPFVCGFSGCGKS 484
Score = 31.1 bits (67), Expect = 0.82
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 9 ETAKKFVCKVQECGKSFHRSYYLSEHMKVH 98
E+ K+F+C + CGK+F + L +H + H
Sbjct: 348 ESKKEFICPEENCGKTFKYASKLQKHEESH 377
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 18 KKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNICG 134
+ F C V C S+ R +L+ H+ H G + FAC + G
Sbjct: 285 RPFSCHVDGCPFSYSRKDHLNRHLLTHQG-KLFACPMEG 322
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 6 HETAKKFVCKVQECGKSFHRSYYLSEHMK 92
HE + FVC CGKSF + H K
Sbjct: 468 HEQKRPFVCGFSGCGKSFSYKHVRDNHEK 496
>02_04_0194 +
20820985-20821027,20822168-20822367,20822477-20822566,
20822820-20822825,20822866-20823009,20823089-20823580
Length = 324
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 3 EHETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNICG 134
E T F+C + CGK+F + L +H VH G R + C+ G
Sbjct: 36 EPTTEVLFLCSYEGCGKTFVDAGALRKHAHVH-GERQYVCHYAG 78
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +3
Query: 18 KKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFAC--NICGK 137
+++VC C K F S L H +H+G + F C CGK
Sbjct: 70 RQYVCHYAGCDKKFLDSSKLKRHFLIHTGEKNFVCPHEGCGK 111
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 6 HETAKKFVCKVQECGK--SFHRSYYLSEHMKVHS 101
H K FVC + CGK +F + L HMK HS
Sbjct: 96 HTGEKNFVCPHEGCGKVLAFSLDFNLKAHMKTHS 129
>01_06_0486 -
29729333-29729356,29729856-29730106,29730364-29730466,
29730571-29730663,29730773-29730905,29731184-29731272,
29731385-29731553,29731930-29732016,29732388-29732506,
29732554-29732706
Length = 406
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 21 KFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNICG 134
KF C +CG+ HRS+Y ++ SG F C +CG
Sbjct: 318 KFFCS--KCGQEGHRSFYCPTVREI-SGRAHFRCRLCG 352
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -1
Query: 239 SGRTSEAPLRLCGHGLPRVVDLYVLVVIRLVARCLPADVTSERTDPAVDLHVLGQI 72
+G E +R+ HG P V + RL+ +PA+V+ + D HVLG++
Sbjct: 558 NGAIGECIIRVWNHG-PSVQPCKCPICRRLINLLVPANVSIDNDDDPQIQHVLGEV 612
>04_01_0532 - 6938763-6941177
Length = 804
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +3
Query: 3 EHETAKKFVCKVQECGKSFHRS 68
+HET K+F +VQ G+++H++
Sbjct: 550 QHETEKEFAVEVQTIGRTYHKN 571
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 75 LSEHMKVHSGVRPFACNICGK 137
L H K G++PF C CGK
Sbjct: 299 LQTHYKRKHGIKPFMCRKCGK 319
>03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598
Length = 537
Score = 27.9 bits (59), Expect = 7.7
Identities = 27/93 (29%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Frame = -3
Query: 276 YGLSLTRAPQTNKWKNVGGATTPLWPRAPARGGS--LCACCD*TCCSMSSRR---CYKRT 112
YG S R T + T+P W R A GG+ A D + RR + T
Sbjct: 430 YGSSTRRTRSTPPTSSASSMTSPRWCRPHAAGGAPIPAASSDAKTVATRQRRTAPTFAAT 489
Query: 111 DGPRCGPSCARTDSSSDGTTYRTPGPCRRTSWP 13
R A SS G+ R R TS P
Sbjct: 490 PVARAMALTAPPTSSPPGSRLRCTASARATSPP 522
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,400,279
Number of Sequences: 37544
Number of extensions: 292249
Number of successful extensions: 785
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -