Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0667
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    48   8e-08
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    44   1e-06
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    42   4e-06
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    28   0.070

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 48.0 bits (109), Expect = 8e-08
 Identities = 20/45 (44%), Positives = 27/45 (60%)
 Frame = +3

Query: 6   HETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNICGKT 140
           H   K +VCK   CGK F  S  L  H + H+G +P+ C+ICGK+
Sbjct: 198 HTGEKPYVCKA--CGKGFTCSKQLKVHTRTHTGEKPYTCDICGKS 240



 Score = 42.7 bits (96), Expect = 3e-06
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +3

Query: 6   HETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNICGKT 140
           H   + + C V  C ++F  S  L  HM++H+G RP  C +C KT
Sbjct: 142 HTKERPYKCDV--CERAFEHSGKLHRHMRIHTGERPHKCTVCSKT 184



 Score = 39.1 bits (87), Expect = 4e-05
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 33  KVQECGKSFHRSYYLSEHMKVHSGVRPFACNICGK 137
           K   C K+F +S  L  HM+ H+G +P+ C  CGK
Sbjct: 177 KCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKACGK 211



 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 6   HETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNIC 131
           H   K + C+   C KSF     LS H ++H+  RP+ C++C
Sbjct: 114 HTGEKPYQCEY--CSKSFSVKENLSVHRRIHTKERPYKCDVC 153



 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 6   HETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNICGKT 140
           H   K + C +  CGKSF  ++ L  H   H G + + C +C +T
Sbjct: 226 HTGEKPYTCDI--CGKSFGYNHVLKLHQVAHYGEKVYKCTLCHET 268



 Score = 35.5 bits (78), Expect = 5e-04
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 45  CGKSFHRSYYLSEHMKVHSGVRPFACNICGKT 140
           CGK+F     L+ H + H+G +P+ C  C K+
Sbjct: 97  CGKTFAVPARLTRHYRTHTGEKPYQCEYCSKS 128



 Score = 34.3 bits (75), Expect = 0.001
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 45  CGKSFHRSYYLSEHMKVHS--GVRPFACNICGKT 140
           C K+F +      H++ H   G  P+ CNICGKT
Sbjct: 67  CQKAFDQKNLYQSHLRSHGKEGEDPYRCNICGKT 100


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 44.4 bits (100), Expect = 1e-06
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +3

Query: 30  CKVQECGKSFHRSYYLSEHMKVHSGVRPFACNICGK 137
           CK   CGK+F R + L  H++ H+G +PF+C  C +
Sbjct: 43  CKCHLCGKAFSRPWLLQGHIRTHTGEKPFSCQHCNR 78


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 42.3 bits (95), Expect = 4e-06
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +3

Query: 6   HETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNICGK 137
           H   K F C   EC K F R ++L  HM++H+G +P+ C+ C +
Sbjct: 4   HTGEKPFECP--ECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDR 45



 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 6   HETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNIC 131
           H   K + C    C + F +   L  H++VH+G RP+AC +C
Sbjct: 32  HTGEKPYHCS--HCDRQFVQVANLRRHLRVHTGERPYACELC 71



 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 90  KVHSGVRPFACNICGK 137
           + H+G +PF C  C K
Sbjct: 2   RTHTGEKPFECPECHK 17


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 28.3 bits (60), Expect = 0.070
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 6   HETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNIC 131
           H  +K F C  ++C  S      L+ H+K HS V  + C  C
Sbjct: 11  HFGSKPFKC--EKCSYSCVNKSMLNSHLKSHSNVYQYRCANC 50



 Score = 25.8 bits (54), Expect = 0.37
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 69  YYLSEHMKVHSGVRPFACNIC 131
           ++L  H++ H G +PF C  C
Sbjct: 2   HHLEYHLRNHFGSKPFKCEKC 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,098
Number of Sequences: 438
Number of extensions: 3236
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)