Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0667
(665 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein ... 41 6e-04
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ... 39 0.003
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 38 0.005
At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein ... 38 0.005
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ... 37 0.010
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ... 31 0.52
At1g28350.1 68414.m03483 tRNA synthetase class I (W and Y) famil... 31 0.52
At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3) ... 31 0.69
At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5) ... 29 2.1
At4g29720.1 68417.m04232 amine oxidase family protein similar to... 29 2.8
At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zin... 28 4.9
At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2) ... 28 6.4
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 28 6.4
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 28 6.4
At5g22355.1 68418.m02608 DC1 domain-containing protein contains ... 27 8.5
At3g45170.1 68416.m04875 zinc finger (GATA type) family protein ... 27 8.5
>At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domains PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1354
Score = 41.1 bits (92), Expect = 6e-04
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 18 KKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFAC 122
K+ +C ++ CGK+F YL +H +VHS RP C
Sbjct: 1258 KRNICPIKGCGKNFFSHKYLVQHQRVHSDDRPLKC 1292
Score = 35.9 bits (79), Expect = 0.024
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 6 HETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFAC--NICGKT 140
H + C + C +F ++ +EH++VH+G RP+ C CG+T
Sbjct: 1284 HSDDRPLKCPWKGCKMTFKWAWSRTEHIRVHTGARPYVCAEPDCGQT 1330
>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1327
Score = 39.1 bits (87), Expect = 0.003
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 6 HETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNICG 134
H+ + F C + C +F + +EH+++H+G RP+ C + G
Sbjct: 1262 HKDERPFECSWKGCSMTFKWQWARTEHLRLHTGERPYICKVDG 1304
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 9 ETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACN 125
+T K+ C + CGK F YL H +VH RPF C+
Sbjct: 1233 QTHKRNRCTHEGCGKKFRAHKYLVLHQRVHKDERPFECS 1271
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 3 EHETAKKFVCKVQECGKSFHRSYYLSEHMK-VHSGVRPFACNICG 134
E + + C+V+ C +F ++ L +HMK VH +RPF C G
Sbjct: 298 EDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVHDDIRPFVCGFPG 342
Score = 35.5 bits (78), Expect = 0.032
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 3 EHETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNI 128
+ E++ C QECG F + +L +HM+ HS R F C +
Sbjct: 59 DEESSSNHTC--QECGAEFKKPAHLKQHMQSHSLERSFTCYV 98
Score = 34.3 bits (75), Expect = 0.074
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 6 HETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFAC 122
H + F C V +C S+ R +L+ H+ H G + F C
Sbjct: 88 HSLERSFTCYVDDCAASYRRKDHLNRHLLTHKG-KLFKC 125
>At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 324
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 3 EHETAKKFVCKVQECGKSFHRSYYLSEHMK-VHSGVRPFACNICG 134
E + + C+V+ C +F ++ L +HMK VH +RPF C G
Sbjct: 210 EDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVHDDIRPFVCGFPG 254
Score = 31.9 bits (69), Expect = 0.39
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 18 KKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFAC 122
+ F C V +C S+ R +L+ H+ H G + F C
Sbjct: 4 RSFTCYVDDCAASYRRKDHLNRHLLTHKG-KLFKC 37
>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 387
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 18 KKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNI--CGK 137
+++VC + CGK F S L H +H+G R + C CGK
Sbjct: 106 RQYVCDQEGCGKKFLDSSKLKRHYLIHTGERNYICTYEGCGK 147
Score = 35.9 bits (79), Expect = 0.024
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 6 HETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNICG 134
H + ++C + CGK+F + L HMK HS C G
Sbjct: 132 HTGERNYICTYEGCGKAFSLDFNLRSHMKTHSQENYHICPYSG 174
Score = 31.1 bits (67), Expect = 0.69
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 3 EHETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVRPFACNI--CGK 137
E T F+C CGK+F L +H +H G R + C+ CGK
Sbjct: 72 EPTTEILFLCSYDGCGKTFFDVSALRKHSHIH-GERQYVCDQEGCGK 117
>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
identical to WIP4 protein [Arabidopsis thaliana]
gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 412
Score = 31.5 bits (68), Expect = 0.52
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +3
Query: 75 LSEHMKVHSGVRPFACNICGK 137
L H K GVRPFAC CGK
Sbjct: 327 LQTHYKRKHGVRPFACRRCGK 347
>At1g28350.1 68414.m03483 tRNA synthetase class I (W and Y) family
protein contains Pfam profile: PF00579 tRNA synthetases
class I (W and Y)
Length = 824
Score = 31.5 bits (68), Expect = 0.52
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -3
Query: 636 RMKSNEPSNERMKIDEGADNVNRNNIAYNPFVSFTLGPYLQFKKYIYMYKFN 481
+M ++PS+ DE AD + + AY P + P L++ KYI + +FN
Sbjct: 699 KMSKSDPSSAIFMEDEEADVNEKISKAYCPPKTVEGNPCLEYVKYIVLPRFN 750
>At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3)
identical to WIP3 protein [Arabidopsis thaliana]
gi|18027014|gb|AAL55723; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 36 VQECGKSFHRSYYLSEHMKVHSGVRPFACNICGKT 140
V+ CGK F ++ ++H G FAC+IC KT
Sbjct: 158 VEVCGKRF----WIPSPAQIHVGPMQFACSICSKT 188
>At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5)
identical to WIP5 protein [Arabidopsis thaliana]
gi|18376498|emb|CAC86167; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 75 LSEHMKVHSGVRPFACNICGK 137
L H K G +PFAC +CGK
Sbjct: 249 LQTHYKRKHGSKPFACRMCGK 269
>At4g29720.1 68417.m04232 amine oxidase family protein similar to
polyamine oxidase isoform-2 [Homo sapiens] GI:16554963;
contains Pfam profile PF01593: amine oxidase,
flavin-containing
Length = 533
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 6 HETAKKFVCKVQECGKSFHRSYYLSEHMKVHSGVR 110
H+ AK +V G++ HR++Y + H +SG+R
Sbjct: 486 HDQAKVHELQVMFAGEATHRTHYSTTHGAYYSGLR 520
>At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zinc
finger (C2H2 type) protein TT1 identical to transparent
testa 1 GI:18253279 from [Arabidopsis thaliana];
contains Pfam profile PF00096: Zinc finger, C2H2 type
Length = 303
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 75 LSEHMKVHSGVRPFACNICGK 137
L H K G +PF+C +CGK
Sbjct: 216 LQTHYKRKHGHKPFSCRLCGK 236
>At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2)
identical to WIP2 protein [Arabidopsis thaliana]
gi|18027012|gb|AAL55722; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 383
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 75 LSEHMKVHSGVRPFACNICGK 137
L H K G++PF C CGK
Sbjct: 288 LQTHYKRKHGIKPFMCRKCGK 308
>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 45 CGKSFHRSYYLSEHMKV--HSGVRPFACNICGK 137
C K F+R +L EHMK+ HS +P C +C K
Sbjct: 22 CYKMFNRREHLVEHMKISYHSLHQP-RCGVCLK 53
>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 45 CGKSFHRSYYLSEHMKV--HSGVRPFACNICGK 137
C K F+R +L EHMK+ HS +P C +C K
Sbjct: 22 CYKMFNRREHLVEHMKISYHSLHQP-RCGVCLK 53
>At5g22355.1 68418.m02608 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain; similar to ULI3 [Arabidopsis
thaliana] GI:17225050
Length = 664
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/19 (52%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = +3
Query: 87 MKVHSGVR-PFACNICGKT 140
+K+H+ +R P CN+CGKT
Sbjct: 73 LKLHNSLRNPCKCNLCGKT 91
>At3g45170.1 68416.m04875 zinc finger (GATA type) family protein
contains GATA-type zinc finger domain,
INTERPRO:IPR000679
Length = 204
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 225 GGATTPLWPRAPARGGSLCACC 160
G TPLW P G+LC C
Sbjct: 121 GTRKTPLWREGPRGAGTLCNAC 142
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,279,462
Number of Sequences: 28952
Number of extensions: 225243
Number of successful extensions: 554
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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