Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0666
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz...    39   7e-04
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   2.4  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   2.4  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   5.5  
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    25   9.5  

>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 39/163 (23%), Positives = 63/163 (38%), Gaps = 9/163 (5%)
 Frame = +3

Query: 177 DVLTKTRIGMTVNALRKSSKDDEVISLCKTLIKNWK---------KFLSTPNTTXXXXXX 329
           ++L +TR+G+ V  LR S  +++V    + ++K WK         K  +T ++T      
Sbjct: 41  ELLKETRLGLVVGKLR-SHPNEKVGEQAREIVKKWKADVSKGRPLKTTTTTSSTPSKHAD 99

Query: 330 XXXXXXXXXXXXXXXXXXXLPASFPPQSNTTDAVRLKCRELLTQALKAAGETSNACGSPX 509
                                +     + T D +R  C  L+  AL    + S++     
Sbjct: 100 VGSQAQKQVQKQSSSGQRTFKSDNVNVNVTDDKIRNNCIGLMYNALVIDSDESSSLIIAK 159

Query: 510 XXXXXXXXCIYAEFKNTDMRYKNRVRSRVANLKDPKNPTLRTN 638
                      A  K T   Y+NR+RS   NLKD  NP LR +
Sbjct: 160 AKEIDAQVLARAAGK-TGSEYRNRMRSLYMNLKDKNNPKLRAS 201


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 231  SKDDEVISLCKTLIKNWKKFLSTPN 305
            ++D E +S+    +K+ K FLSTPN
Sbjct: 981  NEDREALSVISEFLKDLKGFLSTPN 1005


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +3

Query: 27  RDLDKIIKMSVEEDVMKIQKKLTKMTSEDGTGQXXXXXXXXXXQTMAINLDVLTK--TRI 200
           ++   +  ++ EEDV   QKKLT M S     Q           T+   LD   K   +I
Sbjct: 168 KNTSSVTTLTSEEDVSYFQKKLTNMESNFSAKQSEAYDLSRQLLTVTEKLDKKEKDYEKI 227

Query: 201 GMTVNALRKSSKDDE 245
              V++++ S  +++
Sbjct: 228 KEDVSSIKASLAEEQ 242


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 113  VFRCHFSKLFLYFHNIFFNAHFDYFV*ITHF 21
            V+   F  L  YF   +FNA +D+ + +  F
Sbjct: 1130 VYDISFGSLTFYFQKSYFNAIYDFLLKLKRF 1160


>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 171 NLDVLTKTRIGMTVNALRKSSKDDEVISLCKTLIK 275
           N D    T +  TV  L  S+ DD +  L + L+K
Sbjct: 398 NFDEQDNTDLNDTVRGLNTSATDDRINDLMRNLMK 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,054,944
Number of Sequences: 5004
Number of extensions: 31992
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)